Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0040
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 417 TKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFI 539
           T  R+FL IL+ F    L  + Y  A+FT   ++   T FI
Sbjct: 247 TGSRMFLDILIAFIIPYLLWFAYTIANFTFKPKLSFETEFI 287


>SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 393 LIENNFSQTKQRLFLTILLGFYFTILQAYEYIE--ASFTIADRIYGSTFFIATGFHGIHV 566
           ++E N  + K R+ +  +      +L  Y Y +   +  + DRI     ++ T   GI+V
Sbjct: 41  ILEENDPKNKYRINVHSIFWMTAAMLVFY-YTDFYIAVKVDDRINRPWLYLGTALIGINV 99

Query: 567 IIGTLFLLIC 596
           I+G  F++ C
Sbjct: 100 IVGLYFVVWC 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,323
Number of Sequences: 59808
Number of extensions: 197024
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)