Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0039
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_26016| Best HMM Match : Lipoprotein_15 (HMM E-Value=5.8)            29   2.6  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)                      29   4.5  
SB_1417| Best HMM Match : Gal_Lectin (HMM E-Value=4.1)                 29   4.5  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               28   6.0  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     28   6.0  
SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   7.9  
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_21451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = +2

Query: 530 VPGSRTPGHQENNNFCSINLNIGPGDCEWFGVPDAYWGGVRELCERHGL 676
           +P     GHQENNN+CSIN+NIGPGDCEWF  P  YWG +  LCE+HG+
Sbjct: 28  IPPQVQEGHQENNNYCSININIGPGDCEWFATPYEYWGVIHNLCEKHGI 76


>SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 242 KYAQYQAGSFQESLREERERAAPL-----SDSDSGPAKRRRAARMLRFGTN 379
           KY + Q G  ++ L+ +RE+  P+     S + S P  +RR + ++ FG+N
Sbjct: 74  KYDREQKGPIKQHLKYDREQKGPIKLPSTSTATSRPTLKRRMSALVLFGSN 124


>SB_26016| Best HMM Match : Lipoprotein_15 (HMM E-Value=5.8)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 DHAVEVRTQLMQSADENWDATGRRRVWACASHRSHTTVR 241
           D+ ++V  +   +A+  +  TGR + W   S  +HTT R
Sbjct: 129 DNGIDVPQETKANANRPYARTGRHQEWRARSRTAHTTRR 167


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 618 NHSQSPGPILRLIEQKLLFS*CPGVRLPGTFMYNCTVFMPRMTCPTWESML 466
           +HS SP  I+    +K L +  PG  LPGT + +  +F+ R    T E ++
Sbjct: 281 HHSFSPAHIIAGFAKKALANRLPGGFLPGTDVISGFLFVCRQLWTTCEGLI 331


>SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)
          Length = 143

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 15  QDFLPETPHRRGAADSPPLSNSTSDCSRRRH 107
           Q  LP   H R A + PP+ N   D SRRR+
Sbjct: 102 QATLPTGEHGRIAPNPPPVHNVHKDASRRRY 132


>SB_1417| Best HMM Match : Gal_Lectin (HMM E-Value=4.1)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 672 PCLSHSSRTPPQYASGTPNHSQSPGPI 592
           PCLSH    PP Y+S   +H+    P+
Sbjct: 83  PCLSHLDAIPPSYSSPELSHTLMINPL 109


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 180  SQFSSADCMSCVRTSTAWSGHASTSVFVENSPRSSLRAAVSPQHHGD 40
            S+ S  + M C RT    + H   SV ++N  R+ +    S    GD
Sbjct: 866  SELSFQNIMKCYRTQPQAASHVYRSVMIKNRRRAPIPNTGSESSRGD 912


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 7    GSYKISCLKHPIAVVLRTHRRSQTRPRTVLDEDTSGGVARPRGRGAHATHAV 162
            G  +I   +HP+A+     R S+   R + D  T   V R    GAH   A+
Sbjct: 1789 GLIEIDIPQHPVALHTMMTRSSRAISRHISDIQTQRSVIRDTVSGAHTDSAI 1840


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 239 RKYA--QYQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERKWRP 412
           R YA  Q Q GS  +S REE ER    SD     A+     RML   + +  ++  + R 
Sbjct: 589 RAYALLQAQVGSTMDSEREEMERQQLQSDLIESQARIHELERMLDNSSQLVAAESERNR- 647

Query: 413 QLAELQK 433
            ++EL K
Sbjct: 648 AVSELSK 654


>SB_39495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 GSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERKWRPQLAELQKLP 439
           G+   S+   +++   LSD+D    KR++  R +    + ++S + K       L+K P
Sbjct: 8   GNVLTSVNNNQQQRNDLSDADDNDVKRKKRKRSISRDLSSEMSHQSKTHANTHYLKKSP 66


>SB_45061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 GSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERKWRPQLAELQKLP 439
           G+   S+   +++   LSD+D    KR++  R +    + ++S + K       L+K P
Sbjct: 8   GNVLTSVNNNQQQRNDLSDADDNDVKRKKRKRSISRDLSSEMSHQSKTHANTHYLKKSP 66


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 254 YQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNV--DLSD 394
           Y    ++E LREE      ++    G  ++RR A  +   TN+  DLSD
Sbjct: 359 YCKEDYEELLREESRNPTKINSLSKGRPRKRRIATAIESITNLGYDLSD 407


>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 263 GSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERKWRPQLAELQKLP 439
           G+   S+   +++   LSD+D    KR++  R +    + ++S + K       L+K P
Sbjct: 353 GNVLTSVNNNQQQRNDLSDADDNDVKRKKRKRSISRDLSSEMSHQSKTHANTHYLKKSP 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,819
Number of Sequences: 59808
Number of extensions: 385632
Number of successful extensions: 1476
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)