Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0036
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0)                32   0.19 
SB_34640| Best HMM Match : Phosphodiest (HMM E-Value=1.4e-34)          31   0.32 
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      27   5.3  
SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)                      27   7.0  
SB_15048| Best HMM Match : IMS (HMM E-Value=0)                         27   7.0  
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)                       27   7.0  
SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_266| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 579

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 183 MPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTF 362
           +P++    +   PPY    + +S+A  D V+ V++    EDT +       + D      
Sbjct: 168 LPKYREKTRKEYPPYIHCFNNRSIAFKDRVDTVLSWLTSEDTPKFTAFYINEPDGTGHRL 227

Query: 363 SLEDGDVFSQLINCGK 410
            L+ GD   QL+   K
Sbjct: 228 GLDSGDYDRQLVRVDK 243


>SB_34640| Best HMM Match : Phosphodiest (HMM E-Value=1.4e-34)
          Length = 253

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 264 DSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKP 413
           +S EVVIA +   DT+ GYL++  Q   +L   SLE+G     LI    P
Sbjct: 155 ESEEVVIAIR-KVDTITGYLVKQLQKRHLLEKVSLEEGGTLGDLITAILP 203


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 162 LSACRDMMPQHNATAQTSPPP-YTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQ 338
           L  C+   P    TA  +PPP  TI  D  +   GDS  + I+G + ++T   Y   + Q
Sbjct: 4   LETCKARCPAPPTTAPPNPPPALTILFDVNA---GDSYMISISGDVQKETTGSYSCNSSQ 60


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  SEEGSIMKVYACLCAAVVMLVMTSRVSE--ARSTGAPLSACRDMMPQHNATAQTSPPPYT 230
           S   SI      L +++  L  TSR S   +RST    S  R   P   +T  T   P T
Sbjct: 175 SRRSSISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPST 234

Query: 231 ITTDAQSVAPGDS 269
           ITT +++ + G +
Sbjct: 235 ITTSSRASSRGSA 247


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +3

Query: 186 PQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFS 365
           P++   +   PPP T    +Q   PG  VE    G+  +  L  Y  Q    +  LG +S
Sbjct: 632 PEYGGQSMQPPPPKTEGVPSQEYPPGYGVE----GQESQPPLSEYQQQPTIFEQPLGIYS 687

Query: 366 LEDGDVFSQLINCGKPGNAVTHKKH 440
                  SQ IN G+P      +++
Sbjct: 688 ------SSQSINQGQPSQGYNAQRN 706


>SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)
          Length = 282

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 RDMMPQHNATAQTS-PPPYTITTDAQSV 254
           R+++ +HNA++ T+ PPP+  TT ++ +
Sbjct: 150 REVLLEHNASSDTTVPPPFVRTTPSKDM 177


>SB_15048| Best HMM Match : IMS (HMM E-Value=0)
          Length = 660

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +3

Query: 126 SRVSEARSTGAPLSA----CRDMMPQHNATAQTSPPP 224
           SR  EA+  G P+ A    CRD++ QH     +S  P
Sbjct: 39  SRSDEAKKLGIPMGAPEFKCRDLLKQHKVIVFSSNYP 75


>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
          Length = 327

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  CRTTRSSLRAVLQISEEGSIMKVYACLCAAVVMLVM 122
           C+TT S+  A LQ+   GS + +   +   ++M+V+
Sbjct: 43  CKTTASAKLACLQVDSRGSPLMIMMMVIMMIMMVVI 78


>SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 355 PRMSSPCRACSKYPRKVSSGSLPAITTSTLS 263
           P    P R+ S  PRK+ SG +  ++T+ +S
Sbjct: 66  PSPHPPARSKSTLPRKIKSGRIRGLSTTPVS 96


>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 330 PAANIRARCPLAAYLRS-PPPRYRR 259
           P A  R  CPLA+Y +  P  RYR+
Sbjct: 549 PLARYRKGCPLASYRKGCPSARYRK 573


>SB_266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 15  CRTTRSSLRAVLQISEEGSIMKVYACLCAAVVMLVM 122
           C+TT S+  A LQ+   GS M     +  A +M+ M
Sbjct: 43  CKTTASAKLACLQVDSRGSPMMADIMVVMADIMVAM 78


>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 186 PQHNATAQTSPPPYTITTDAQSVAP 260
           PQH  T+ TSP P   TT   S +P
Sbjct: 71  PQHKTTSWTSPSPQYKTTSWTSPSP 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,327
Number of Sequences: 59808
Number of extensions: 205399
Number of successful extensions: 1021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)