Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C18
         (980 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   1.9  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          30   2.5  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   29   5.8  
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   5.8  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           29   7.6  

>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 353 FSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQXNVLIRLLHSYYPAL*HRQ 532
           F++ YE  RE A++ FK+     + +  Y+     +    Q N  IR+   Y PA  HR+
Sbjct: 725 FALHYEGSRESAVSAFKMGKSRAEIQRAYRERKKGKDSNWQQNESIRVQKYYTPASKHRR 784

Query: 533 LRS 541
           L+S
Sbjct: 785 LKS 787


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
 Frame = +3

Query: 816 PPPXXSPAXGGTPGXXXXPSXATPXGXXXF-XXXPPNXXXPXPPGG 950
           PPP   P  G  P     P    P G        PP    P PPGG
Sbjct: 242 PPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGG 287


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = +3

Query: 804 LSXXPPPXXS-PAXGGTPGXXXXPSXATP-XGXXXFXXXPPNXXXPXPPGG 950
           +S  PPP    P  GG PG    P    P  G       PP      PPGG
Sbjct: 153 MSEPPPPGTQPPGQGGYPGYNQPPPGHYPAPGQPGGYYPPPGGYQQPPPGG 203


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
 Frame = +3

Query: 816 PPPXXSPAXGGTP--GXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           PPP  +P  GG P  G    P  + P G       P     P PP
Sbjct: 70  PPPGIAPGIGGPPPSGQYGAPPTSQPYGAPPTSGYPGYQQHPPPP 114


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 256 QHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLCQRF*MF 435
           Q  G  G + + E + K   D+QG++PS    + D+ R  +  S     AV+L Q    F
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS----LFDVDRVRKNLSEITPTAVVLLQELDRF 263

Query: 436 LQNSMLRQ 459
             N ++R+
Sbjct: 264 --NVLIRR 269


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 316 DVQGRIPSQEFGILDLLR-KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 465
           D  G + S    I  + R K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 192 DFFGGVVSDSDRISRITRIKHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,880,141
Number of Sequences: 59808
Number of extensions: 405843
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2907797044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)