Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E07
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      33   0.15 
SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)                       29   3.3  
SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_7452| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)                       27   7.6  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 298 GPTQAEIASVLGF-ELDRNIVRRKFERIIKSLKKESSEY-VLNFGSKIYIGQSVEPRQRF 471
           G T  +IA++ G+ E +     R F++  ++L      Y  +   +KI+     E  + F
Sbjct: 14  GTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGHDEFEILEEF 73

Query: 472 AAIAQEFYKTELKSVDFLN 528
               +EFY +E+  VDF+N
Sbjct: 74  LHGTREFYHSEMAQVDFVN 92


>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
          Length = 501

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 328 LGFELDRNIVRRKFERIIKSLKKESSEYVLNFG 426
           LG + D  + R+++ R+I+ +K+  ++ VL+FG
Sbjct: 16  LGPKFDPPVYRQRYHRVIEVVKEHKAKRVLDFG 48


>SB_51379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 148 PSSQDQQGLHYPE*QPLLEQRIPPPLVQ 65
           PSS DQ  L     QPL+E+ I PP ++
Sbjct: 97  PSSVDQSALDQVPQQPLIEELIDPPSME 124


>SB_7452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 428 LPKFKTYSEDSFFKDFII--LSNFLLTMFLSNSNPRTEAISACVGP 297
           L K K Y   + F +  I  L   L+  ++  ++PRT A++   GP
Sbjct: 5   LMKLKVYKGTNLFMESAIIDLPTALVAFYMDTNDPRTPAVAVASGP 50


>SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)
          Length = 529

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 422 KFKTYSEDSFFKDFII--LSNFLLTMFLSNSNPRTEAISACVGP 297
           K K Y   + F +  I  L   L+  ++  ++PRT A++   GP
Sbjct: 2   KLKVYKGTNLFMESAIIDLPTALVAFYMDTNDPRTPAVAVASGP 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,108
Number of Sequences: 59808
Number of extensions: 251867
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)