Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D24
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            28   4.3  
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   9.9  

>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 535 YGPKPFVRTLEVITCCLIVGRNCNI 461
           + P  F R L +  CCL   RNC++
Sbjct: 296 FSPNVFYRELPLPVCCLTYWRNCSV 320


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +1

Query: 247 KAITYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSE 426
           K +T+ IV   +  +Y+       + + E   + Y  E + F S +  FH      W   
Sbjct: 3   KGVTFEIVLNRKNRIYHPGE----VVSGE--CVVYSKESLKFRSVHVEFHGEARTNWDEM 56

Query: 427 RYGNLKHRRGEIYYNFYQQ-LNNTLLLRASL 516
                 H+  E+Y+N     L N  L RA L
Sbjct: 57  ENYTTTHKNEEVYFNKKTSLLANVHLYRAVL 87


>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 250  AITYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSER 429
            A+ + I ++   Y+YYA     + YNN    LTY+      N+  + + + L     ++ 
Sbjct: 822  ALKWAITEKFRDYLYYAPSFTVYTYNNP---LTYILTTAKLNATGHRWVAEL-----ADY 873

Query: 430  YGNLKHRRGEIY 465
               +K+R G IY
Sbjct: 874  NFTIKYRPGRIY 885


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 355 TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQ-LNNTLLLRASL 516
           TE + F S +  FH      W         H+  E+Y+N     L N  L RA L
Sbjct: 48  TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYRAVL 102


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 TYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYY 387
           TYG V    Q V ++  +N  + N     LT+ T D+G +S YY
Sbjct: 125 TYGAVSMTTQEVCHSKKANLVVLN-----LTFRTSDLGGHSDYY 163


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 268 VKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLK 444
           ++  +Q++  A +  TF+Y+  E+       D    +  Y  H  L FW   +   N++
Sbjct: 644 IENLKQFIVQARFVETFVYDMTEKPGKCAIRDRERKTISYNDHRFLVFWTDFQNTNNMR 702


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,005
Number of Sequences: 59808
Number of extensions: 342301
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)