Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D11
(327 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.68
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.68
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09) 28 1.6
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7) 28 2.1
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 28 2.1
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 27 2.7
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 3.6
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 27 4.8
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4) 26 6.3
>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.5 bits (63), Expect = 0.68
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 109 VVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQY 288
VV + ++ NA + +ESSF+ V + +SN LQSL P + +Y
Sbjct: 175 VVSESHDVPTNNALEIQYEEVKESSFSEVIIRTVSNNIKQCYELQSLTDPFIQDTPINEY 234
Query: 289 QPLSIPAY 312
PL Y
Sbjct: 235 CPLEHRPY 242
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 305 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
G G++W VS G G C +VP L I +T
Sbjct: 2663 GSMEGFWWSYVSMTTVGYGDRCPVSVPARILSIGWT 2698
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 326 PPNLL*AGIDNGWYWYEVSAVNCGLGSDCRAT 231
P ++ + N YEV +NCGLG C T
Sbjct: 431 PERIIKSRTQNKVECYEVQWINCGLGESCEPT 462
>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
Length = 441
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 305 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEI 207
G G++W VS G G C A+VP L I
Sbjct: 36 GSMEGFWWSYVSMTTVGYGDRCPASVPARILSI 68
>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
Length = 421
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 211 SNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFG 324
S VR T A+ SLP P + D + + + + +FG
Sbjct: 234 SEVRKTTTAILSLPDPGIHPDEQHSEENTPVEGHRKFG 271
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 190 SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAY 312
SVP S+VR T Q + +SY Y P + P+Y
Sbjct: 131 SVPSTSPSSVRSATPYYPQTQQQQSSVSSSYSYYPRAAPSY 171
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 88 VTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQS-LPSP 258
V+P TS++V + + ++++ E D P + + +S P +D P ++ S +PSP
Sbjct: 789 VSPRTSVIVEESDAESSIDEEDEDAPEYIDQVSSSPPQHD---YMPTQASVSSPVPSP 843
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 168 SRF--INRFRVHCIRFIWFHYYQRRQRCDKFIL 76
SRF N+ R HC+ ++W + Q+R + F L
Sbjct: 3 SRFQATNKLRNHCLGYLWPNACQQRSDAESFTL 35
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 97 LTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLT 267
+TSL V +PN T+A NA K + + + D N V S+ P +T
Sbjct: 1713 VTSLNVTQPNITDAGNA---TKANVTSRNVTQLSITDAGNATQANVTSHSVTQPNIT 1766
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 73 LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSL- 249
+K T L S V NE+ + + +++ ++ S+P + N P TV++ S+
Sbjct: 1134 VKESTTTLLLSSSSVPLNESTSNASVAINSTVQASTTIYSLPPTSMLNSTPATVSIDSIA 1193
Query: 250 PSPQLTADTS 279
PSP +S
Sbjct: 1194 PSPTTPPSSS 1203
>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
Length = 361
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 112 VVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQ-- 285
+VKP ETN + +VD F S+ +S +DI + G + P A ++
Sbjct: 283 IVKPRETNTFASFTVDDTFFYPSTGSS---FDIEDRPMGVSSPFDTIQPTQEAQVLHESP 339
Query: 286 YQPLSIP 306
Y P S P
Sbjct: 340 YDPFSTP 346
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,316
Number of Sequences: 59808
Number of extensions: 180859
Number of successful extensions: 466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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