Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D10
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)              29   1.5  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24)                   28   4.6  
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          28   4.6  

>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
          Length = 1008

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 194 FSPHNRRRLKI-LSAYIRWDRLSPATCQIAWNDYI 93
           + P  RR+L++ L + +R+ R+  ATC++ W   I
Sbjct: 209 WDPMKRRKLRVVLESVVRFFRIFKATCKVRWKSDI 243


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 131 SPATCQIAWNDYIRLCRTNT 72
           SP  C+ AWND + LC  N+
Sbjct: 282 SPIVCREAWNDSLALCMDNS 301


>SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24)
          Length = 227

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 357 VYTTVTIPKYTISKYL--SVCQFVRGNHRHGWTDFDKTFF 244
           + T V   K  +S  L  +V  F  G H+ GW D+D   F
Sbjct: 129 ITTAVGAKKGAVSASLPPAVAAFETGGHQGGWDDYDHNMF 168


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 184 TTGGALRYYPPTSGGTVSHQP 122
           TTGGA+   P T+GG VS +P
Sbjct: 299 TTGGAVSMEPLTTGGPVSMEP 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,033
Number of Sequences: 59808
Number of extensions: 330552
Number of successful extensions: 1151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)