Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D06
(255 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 29 0.45
SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74) 27 2.4
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 27 3.2
SB_40492| Best HMM Match : PROCN (HMM E-Value=0) 27 3.2
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22) 27 3.2
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 26 5.6
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 26 5.6
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 25 7.4
SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8) 25 9.8
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 25 9.8
SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8) 25 9.8
SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11) 25 9.8
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 94 NKVKSY--ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDP 249
+++K Y +C Y +G K SP W GS TCP G+ P
Sbjct: 1497 DQIKRYCGVCYPGYCSRHGTCSSNNGTRTCKCSPSWSGSVCSKLNITCPAGLIP 1550
>SB_31607| Best HMM Match : NOG1 (HMM E-Value=0.74)
Length = 146
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 147 TAFLATVVSLAYVGLHFITVDVSQGYEAQ*NSQDCEFRHFVPRSL 13
+AF+ T+ L +F + +S GY+ + Q CE+R + + L
Sbjct: 28 SAFITTLCQLKDAIYYFNDMTLSAGYKRCSSRQKCEYRMYKKKEL 72
>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1612
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 244 RLRLDRYRCRPQCNFRTRT 188
+L LD C P CNF T+T
Sbjct: 141 KLYLDNTYCHPSCNFPTKT 159
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +1
Query: 103 KSYIC----QGYYGCEKCCVHLGSGCEKLKSSP 189
+SY C +GY CV++ +GC +L SP
Sbjct: 395 RSYFCTACKKGYNNVRHACVNICNGCGELDCSP 427
>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
Length = 1784
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 111 HMPR-ILRLREMLCSPWFRLREVKIL 185
+MP +L+L E + PW ++R+VK+L
Sbjct: 80 YMPHAVLKLLENMPMPWEQIRDVKVL 105
>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
Length = 869
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 139 KCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDG 240
K V L C K+ P W S CT TC G
Sbjct: 153 KPTVTLTQKCNKVNCPPEWVPSDWSACTKTCKGG 186
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 115 CQGYYGCEKCCVHLGSGCEKLKS 183
C+ Y + CV +G+GC K+K+
Sbjct: 85 CRNCYRFHRFCVFVGTGCFKMKT 107
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 79 TYVNGNKVKSYICQGYYGCEKCCVHL 156
T S +CQ YG EK C +L
Sbjct: 365 TIATNRSASSNVCQSSYGSEKLCDYL 390
>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 123 SLAYVGLHFITVDVSQGY 70
S+A GL IT+DVS GY
Sbjct: 355 SIARKGLEVITIDVSSGY 372
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +1
Query: 103 KSYIC----QGYYGCEKCCVHLGSGCEKLKSSP 189
+SY C +GY CV++ +GC +L SP
Sbjct: 442 RSYYCTACKKGYNNVRHACVNVCNGCGELDCSP 474
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 132 LREMLCSPWFRLREVKILAVLVRKLH*GLHLYLSRRSRP 248
LRE+L RL+E+K+ A++ L + +L +RP
Sbjct: 489 LREVLALKTSRLKEIKMAAIMATTLAPSVIAFLELVARP 527
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 118 QGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTC 231
+G YGC C + C + + + G TCTC
Sbjct: 22 KGGYGCVSLCPQMMIKCPENQRVAYHEGPAVPESTCTC 59
>SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)
Length = 212
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 91 GNKVKSYICQGYYGCEKCCVHLGSG 165
GNK + + GC KC VHL G
Sbjct: 173 GNKAVKHAKETRNGCRKCDVHLCVG 197
>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 91 GNKVKSYICQGYYGCEKCCVHLGSG 165
GNK + + GC KC VHL G
Sbjct: 240 GNKAVKHAKETRNGCRKCDVHLCVG 264
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 79 TYVNGNKVKSYICQGYYG 132
T V G KV+ ++C G YG
Sbjct: 837 TCVTGCKVRMHVCHGMYG 854
>SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8)
Length = 88
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 91 GNKVKSYICQGYYGCEKCCVHLGSG 165
GNK + + GC KC VHL G
Sbjct: 49 GNKAVKHAKETRNGCRKCDVHLCVG 73
>SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 203 LPNQNGEDFNFSQPEPR*TQHFSQP*YPW 117
+PN+N SQ EP TQH P YPW
Sbjct: 130 VPNEN----QGSQSEPI-TQHLLDPIYPW 153
>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
Length = 587
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 107 PTYAKDTTVARNAVFTLVPAARS*NPRRS 193
P YA+D+TV + T++ A NPR++
Sbjct: 210 PAYAEDSTVLTVSESTVLSALAKLNPRKA 238
>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 249 RVDSVWTGTGADLSVTSEPER 187
R + W GTGAD+ VT E+
Sbjct: 318 RQGTKWQGTGADIKVTYADEK 338
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,307,943
Number of Sequences: 59808
Number of extensions: 160159
Number of successful extensions: 450
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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