Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.35 
SB_47144| Best HMM Match : IU_nuc_hydro (HMM E-Value=0)                27   3.2  
SB_14268| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)                   25   7.5  

>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 80  VSMKGTKSRFVIDNDAGGDDAMAIFMSL 163
           +S   T+++ +ID D G DDA AI ++L
Sbjct: 79  ISTNSTRAKVIIDCDVGVDDAQAIMIAL 106



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 104 WTWFPSYSRINTTQ 63
           W WF  Y+ +NTT+
Sbjct: 292 WAWFDEYAAVNTTK 305


>SB_47144| Best HMM Match : IU_nuc_hydro (HMM E-Value=0)
          Length = 316

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 98  KSRFVIDNDAGGDDAMAIFMSL 163
           + + +ID D G DDA AIF++L
Sbjct: 10  RPKVIIDCDVGIDDAQAIFIAL 31


>SB_14268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 104 WTWFPSYSRINTTQ 63
           W WF  Y+ +NTT+
Sbjct: 69  WAWFDEYAAVNTTK 82


>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
          Length = 514

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 62  SVLCLCVSMKGTKSRFVID 118
           +V  LCVSM G K+ F++D
Sbjct: 82  TVKALCVSMSGEKTPFLLD 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,557,724
Number of Sequences: 59808
Number of extensions: 86251
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)