Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C09
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.13 
SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10)               31   0.22 
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.29 
SB_34474| Best HMM Match : Mrr_cat (HMM E-Value=2.3)                   29   1.6  
SB_29261| Best HMM Match : Mrr_cat (HMM E-Value=2.3)                   29   1.6  
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   3.6  
SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 136 HWTGVVDSIIPIIH--PSDTTTLSPVVGSKCLIKIS 237
           H T ++D  + I H  P   TTL  +VG KC IK S
Sbjct: 345 HGTDIIDDGVFICHLSPKQRTTLGKLVGDKCTIKCS 380


>SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10)
          Length = 330

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  RVWNPDFSLTSTVLRNYTISTGPAS-SIQSSQLSTQA 184
           RVWN D S T+TV R  T+++GP S S     +S+QA
Sbjct: 40  RVWNLDTSGTTTVTRVCTVTSGPWSVSPNGRYVSSQA 76


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYN 123
           F+R+L+ +  GE V + L   +GM E+  PVQ LW N
Sbjct: 762 FIRYLISSNIGEVVSIFLTAALGMPEALIPVQLLWVN 798


>SB_34474| Best HMM Match : Mrr_cat (HMM E-Value=2.3)
          Length = 620

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 15  SRVWMCRTVVVDNSVHRTDYHVFG 86
           +RVW+C  ++V + V R +  VFG
Sbjct: 424 TRVWLCGRIIVTHEVQRCEDSVFG 447


>SB_29261| Best HMM Match : Mrr_cat (HMM E-Value=2.3)
          Length = 512

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 15  SRVWMCRTVVVDNSVHRTDYHVFG 86
           +RVW+C  ++V + V R +  VFG
Sbjct: 316 TRVWLCGRIIVTHEVQRCEDSVFG 339


>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 67  RITTCLEPGFFSHINGPTELYHKHWTGVVDSIIPIIHPSDTTTLS 201
           R+TTCLE     HI GP  ++       +++  P I P D  TLS
Sbjct: 450 RLTTCLELSVIEHI-GPQLMHFLKAADELENQYP-IQPMDDETLS 492


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 246 FKIAYLY--ETFTSHHGREGCRI-AWVD 172
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 21  VWMCRTVVVDNSVHRTDYH 77
           VW+C  V V N   R DYH
Sbjct: 252 VWLCLVVFVYNKCTREDYH 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,384
Number of Sequences: 59808
Number of extensions: 223700
Number of successful extensions: 486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)