Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B24
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 141 9e-63
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 141 9e-63
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 29 2.8
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 28 3.6
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6) 28 4.8
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 27 8.4
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089) 27 8.4
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 27 8.4
SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 141 bits (342), Expect(2) = 9e-63
Identities = 67/88 (76%), Positives = 72/88 (81%)
Frame = +2
Query: 230 ECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAILENANVLARYASICQSQ 409
E TTQGLD L +RCAQYKKDGC FAKWRCVLKI TPS A+ ENANVLARYASICQ
Sbjct: 120 ETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQN 179
Query: 410 RIVPIVEPEVLPDGEHDLDRAQKVTEVV 493
+VPIVEPEVL DG+H L+RAQKVTE V
Sbjct: 180 GLVPIVEPEVLCDGDHTLERAQKVTEAV 207
Score = 116 bits (279), Expect(2) = 9e-63
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +2
Query: 5 ELRKIAQAIVAPGKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSENI 184
EL++IA+AIVA GKGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S +S I
Sbjct: 12 ELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGKEMSNAI 71
Query: 185 SGVILFHETLFGSEDECT 238
SGVILFHET++ D+ T
Sbjct: 72 SGVILFHETVYQKADDGT 89
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 141 bits (342), Expect(2) = 9e-63
Identities = 67/88 (76%), Positives = 72/88 (81%)
Frame = +2
Query: 230 ECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAILENANVLARYASICQSQ 409
E TTQGLD L +RCAQYKKDGC FAKWRCVLKI TPS A+ ENANVLARYASICQ
Sbjct: 120 ETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQN 179
Query: 410 RIVPIVEPEVLPDGEHDLDRAQKVTEVV 493
+VPIVEPEVL DG+H L+RAQKVTE V
Sbjct: 180 GLVPIVEPEVLCDGDHTLERAQKVTEAV 207
Score = 116 bits (279), Expect(2) = 9e-63
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +2
Query: 5 ELRKIAQAIVAPGKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSENI 184
EL++IA+AIVA GKGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S +S I
Sbjct: 12 ELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGKEMSNAI 71
Query: 185 SGVILFHETLFGSEDECT 238
SGVILFHET++ D+ T
Sbjct: 72 SGVILFHETVYQKADDGT 89
>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 284 SCTERNAGP-SHRDLEWCTRLQIRTGFRGRESLPKCSQR 171
SC+ ++G S +++ WC RTGF E CS R
Sbjct: 24 SCSSLSSGTCSPQNIPWCLGFIGRTGFESNEEKSDCSNR 62
>SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 11 RKIAQAIVAPGKGILAADESTGTMGKRLQDIGVE 112
R Q +V PG + D + G +GKRL ++ VE
Sbjct: 75 RPFIQRLVLPGGHVRLQDSNYGKIGKRLYELAVE 108
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +2
Query: 128 RRKYRQLLFSSDPALSENISGVILFHETLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAK 307
RR + S+DP + +I ++ + + EC +D ++CA++ K
Sbjct: 518 RRVFGNYEHSTDPPIILDIRSLVFWRRNVQEHRVECAVGSIDFRERQCAEFNTRVIRNRK 577
Query: 308 WRCVLKIGR 334
W KI R
Sbjct: 578 WHWKPKILR 586
>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 226 FRSEQGFVEENHSRNVLRECRVRTEQELTVFTAILLSVFDSNVLETLAHCTSGLIGCEDT 47
F +QG + SR R C V + +F A+ L +DS+ L L C DT
Sbjct: 430 FLQDQGNSQSTKSR---RRCEVAKRYVVVIFVALALVDYDSSFKHLLYELNPALSCCLDT 486
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 181 VLRECRVRTEQELTVFTAILLSVFDSNVLETLAHCTSG 68
V + C R + + V A++ VFD +V+E HC G
Sbjct: 332 VEKPCHCRDGESVQVNNAMVNVVFDGDVVEKPRHCRDG 369
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -3
Query: 470 RGPSRARHQAKPQAQLLARYADSGRWR-RSEPTHWHSPRWLGTMECC--GRSSIRNATWQ 300
R SRA + +P +L G W+ +E T W ++ GR+S R+A
Sbjct: 1148 RRESRAPNHPRPDLNILGELKPEGSWQCGTELTEWRKRHFVSCSSRWPRGRASRRDARAC 1207
Query: 299 SGSRPSCTERNAGP 258
+ + PS R+ P
Sbjct: 1208 APTMPSARLRHTQP 1221
>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
Length = 1953
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 310 ALRIEDRPQHSIVPSHLGECQCVGSLRL-HL 399
A+++ + QH+ V S G+CQ G LRL HL
Sbjct: 111 AIQLPEPAQHNAVCSTSGKCQAGGELRLSHL 141
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 2 EELRKIAQAIVAPGKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSE 178
EEL+++ Q + A G G + +E M K++Q E E R +R + D ++SE
Sbjct: 36 EELQQMIQEVDADGNGEVDFEEFLAMMKKQMQHRDAE--AEMREAFRVFDRNGDGSISE 92
>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
Length = 1617
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 407 DSGRWRRSEPTHWHSPRWLGTMECCGRSSIRNATWQSGSRPS--CTERNAGPS 255
+S RW SEP++ + P+ L C GRSS T + P+ TE + PS
Sbjct: 198 ESRRWL-SEPSYGYWPQQLNLAVCPGRSSPSFLTMRLSPLPTPLATEESDLPS 249
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/55 (25%), Positives = 21/55 (38%)
Frame = -3
Query: 404 SGRWRRSEPTHWHSPRWLGTMECCGRSSIRNATWQSGSRPSCTERNAGPSHRDLE 240
+G W R WH W + CGR S A + C ++ SH ++
Sbjct: 211 TGFWARFPVPTWHVTEWDTCSKTCGRGSQSRAVF-------CRKKTTSSSHETID 258
>SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 69 PLVQWASVSRTLESKTLRRIAVNTVNS 149
P+V W++V R ES AVN+V+S
Sbjct: 1 PVVDWSAVERMRESVISNMAAVNSVSS 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,367
Number of Sequences: 59808
Number of extensions: 411158
Number of successful extensions: 1381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -