Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A04
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)                       26   7.2  
SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1)                      25   9.5  

>SB_51297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 309 IIQNYIRKKKTRLSFTLNTPIIKKLNNGISLIINENQFNDIVN*RGKD 166
           +I N++      + ++   P IK +  G    +  N F  + N +GKD
Sbjct: 149 VIHNHVVPSNILIEYSTGVPPIKAILGGFGRAVYLNSFKRLNNSKGKD 196


>SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)
          Length = 128

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 288 KKKTRLSFTLNTPIIKKLNNGISLIIN 208
           +K T  +FTL  P+I ++N+ +S I N
Sbjct: 80  QKATNTAFTLAKPVIGEVNDPVSTIDN 106


>SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  YIAGVCYLYTGSFGTKENG*GRKTSFPLDTRRPSSFY 136
           YI  VC+L     G  +   G  T+FP D+++ + FY
Sbjct: 256 YIHDVCFLQPVEAGVLDCR-GFSTAFPRDSQQANDFY 291


>SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1)
          Length = 215

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 242 KNLIMVYRLS*MRISLTTLLINEVRINNFAYHPL 141
           +N ++  R +  R +L   L +E+RINN+  H L
Sbjct: 54  ENYLLALRYTLKRTTLLRRLPSEIRINNYNTHLL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,600
Number of Sequences: 59808
Number of extensions: 157568
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)