Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D12
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 31 0.44
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 31 0.58
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 28 4.1
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 27 7.2
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 27 7.2
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 27 9.5
SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 345 TLSVPEWTTCSKITLVHLRPPHTPMSLTATTT 440
TLS + T+ S T ++ PPH+P + T TTT
Sbjct: 1748 TLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTT 1779
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.1 bits (67), Expect = 0.44
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 VRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAY-DNVN 184
V+ + TIN + +K + GN + L A S N K G ++Y DN+N
Sbjct: 662 VKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYSDNMN 718
Query: 185 GHGATLT-KTHIPGFGDKMTAAGKVN 259
A T + IPG K + KVN
Sbjct: 719 NSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 191 GATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 361
G+T T IPG G + GK ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +2
Query: 170 YDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 349
Y NGH L ++ P T V F NN+DFS++ A N PN+ F
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330
Query: 350 V 352
V
Sbjct: 331 V 331
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 135 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 31
W+V ++EP LS + ++ T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 121 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 26
D +K+ E + IA++ L+H+ G I DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 27.1 bits (57), Expect = 7.2
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 56 GAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 235
G V +T E +L ALG +T+ + T L++ N + A+ K+ I G
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454
Query: 236 MTAAG--KVNLFHNNNHDFSAKAFATKNMP 319
T K+N + + DF A A TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +2
Query: 224 FGDKMTAAG---KVNLFHNNNHDFSAKAF 301
F ++ T++G KV LFH N+ F+AK+F
Sbjct: 35 FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.1 bits (57), Expect = 7.2
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +2
Query: 89 ENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFH 268
+N+K S D ++ K A T+GLA + +G ++P +++ K N
Sbjct: 83 DNYKKKKTKSKDNNSETKAKAGTSGLAKNKTKDNGT----PNLPSLFERIK---KKNNAT 135
Query: 269 NNNHDFSAKAFATKNMPNIPQVPNFNT 349
N S + P +P++ +F+T
Sbjct: 136 KNGETTSQVTINSSGTPALPKLASFDT 162
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 345 TLSVPEWTTCSKITLVHLRPPHTPMSLTATTT 440
TLS + T S T ++ PP +P + T TTT
Sbjct: 134 TLSTLKTTATSTSTTKYIPPPPSPPTTTTTTT 165
>SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 344 NTVGAGVDYMFKDHIGASATAAHTDVFNRNDY 439
NT+G VD D GA+ D FNR +Y
Sbjct: 76 NTMGILVDVYIDDFYGAAMPDVSQDEFNRMNY 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,620
Number of Sequences: 59808
Number of extensions: 330780
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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