Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D10
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)        52   1e-07
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)               27   3.2  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               27   4.3  
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)       27   5.7  
SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05)                   26   7.5  
SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82)                      26   7.5  
SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      26   9.9  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    26   9.9  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +2

Query: 194 GTACGKYYRVCTLAITDPGDSDIITTLP 277
           GTACGKY+RV  L+ITDPGDSDII ++P
Sbjct: 72  GTACGKYFRVSVLSITDPGDSDIIRSMP 99



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 22/34 (64%), Positives = 23/34 (67%)
 Frame = +1

Query: 94  NAPPLRKSEIEYYALP*PKQGVHHYEWKTIIELG 195
           N P LRKSEIEYYA+   K GVHHY     IELG
Sbjct: 41  NTPQLRKSEIEYYAML-AKTGVHHYTGNN-IELG 72


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 190 AQLLFSTRSGGHPVLAKGEHNILSPTSSEEAHSLAMITN 74
           A LLFS+R G    L  G +    P + EE ++  ++TN
Sbjct: 341 APLLFSSRCGKSVRLMNGNYTAFRPRALEEFNNAVVLTN 379


>SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)
          Length = 441

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 301 LLNLSCCLRQCCYDVRIARVCDC*STYSVIFSASSTRAQLLFSTRSGGHPVLAKGEHNIL 122
           L+ +SC       +V +  VC   + YS+   A       L +T   G   LAK   N  
Sbjct: 279 LVYVSCAYAHAAREVCVREVCFAQTHYSMASIAILVGGAFLNATAFVGGNYLAKSLSNDE 338

Query: 121 SPTSSE-EAHSLAM 83
           SP  +E E H  A+
Sbjct: 339 SPALAEKERHDKAL 352


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 259 VRIARVCDC*STYSVIFSASSTR 191
           +R+ RV D  STY ++ S +STR
Sbjct: 773 IRVQRVYDYKSTYGIVLSRNSTR 795


>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
          Length = 649

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 160 HHYEWKTIIELGYCLRKILQSMY 228
           H++  KTI  + Y LRKIL S++
Sbjct: 81  HNFSLKTIRFMAYLLRKILTSLF 103


>SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05)
          Length = 348

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 295 NLSCCLRQCCYDVRIARVCDC 233
           +LS C++QC YD  + + C+C
Sbjct: 188 SLSACIKQCLYDYGMEK-CNC 207


>SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82)
          Length = 335

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 285 VASGNVVMMSESPGSVIARVHTL*YFPQAVPELNYCFPLVVVDTLFWLRESIIFYLRLP 109
           V     ++ S     ++  V  L    Q +  L+ C   ++VDTLF +   +I+Y   P
Sbjct: 87  VPGAGYILASIPERLILVDVLILCLLSQKLLPLSLCLTAIIVDTLFAILTFVIWYRITP 145


>SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1775

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 147  WLRESIIFYLRLPQRRRIP 91
            WLR   I+ L  P RRR P
Sbjct: 955  WLRSQFIYTLHKPYRRRYP 973


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 274 QCCYDVRIARVCDC*STYSVIFSASSTRAQLLFS 173
           Q C +    R+C C   Y++ F   S RA L+ +
Sbjct: 134 QVCLNTPNGRICSCHHGYTLEFDEESCRAFLILA 167


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 258 SESPGSVIARVHTL*YFP 205
           +++PGSV+ R+H L Y P
Sbjct: 799 NKAPGSVVGRIHALSYDP 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,919
Number of Sequences: 59808
Number of extensions: 159787
Number of successful extensions: 373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)