Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D05
(285 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.26
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 28 1.0
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 26 4.2
SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3) 26 5.6
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06) 26 5.6
SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9) 26 5.6
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 25 7.4
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 25 7.4
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32) 25 7.4
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 25 9.8
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 25 9.8
SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0) 25 9.8
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 25 FGDKVTAAGKVNLFH---NDNHDITAKAFATRNMPDIANVPNFNTV 153
FGDK A + FH ND D + + TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/83 (26%), Positives = 42/83 (50%)
Frame = -1
Query: 273 TLEEVQLSVQGVIVTIDEVRVSGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGESL 94
T ++V L+ + V +T D+V ++ +L + + TD V + +D++ S G L
Sbjct: 458 TGDDVHLTSEHVHLTSDDVHLTSDD--VHLTSDD--GNLTDDVHLTS-NDVYLTSDGVHL 512
Query: 93 RCDVVVIVVEEIHFAGSCHLVSE 25
D V + +++H G HL S+
Sbjct: 513 TSDDVHLTGDDVHLTGDVHLTSD 535
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 129 SDIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSE 25
+D++ S G L D V + +++H G HL S+
Sbjct: 591 NDVYLTSDGVHLASDDVHLTDDDVHLTGYVHLTSD 625
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 162 SATDSVEVGYISDIWHISGGESLRCDV-VVIVVEEIHFAGSCHLVSEPGDV 13
+A DS GY+ + +H GES+ V VV+V+ + G ++ G V
Sbjct: 1274 AARDSPVRGYVLEGFHAGEGESVLAPVRVVLVLRGVDVKGCSEVLRRRGGV 1324
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 175 FKDKIGASATAAHTDFINRNDYSLDGKLNLFKS 273
+ +K AS + I+ + Y LDG LN+ K+
Sbjct: 838 YTEKFNASLPLTYDMTIHNSTYDLDGNLNIVKT 870
>SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 166 DYMFKDKIGASATAAHTDFINRN 234
D ++IG SA A TDF NRN
Sbjct: 78 DKKSSEEIGVSAPAPRTDFRNRN 100
>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
Length = 669
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 138 GYISDIWHISGGESLRCDVVVIVVEE 61
GY+ D+W I G S V V+ EE
Sbjct: 64 GYVDDLWEILLGTSTPLPVGVLTTEE 89
>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
Length = 882
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 130 NVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDYSLDGKL 258
N+P NT+ D+ F ++ + + F+ +D L G++
Sbjct: 679 NLPEINTIINTSDFNFDNQNNGTDVTVNVPFLTTDDLMLHGQI 721
>SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)
Length = 402
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 140 LGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLSPNPG 18
L TLAI+ + + A A++ L++ + AAV + PN G
Sbjct: 348 LCTLAITAVAITAVTVAIVVTLAVTVAIVVIAAVEVRPNGG 388
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +1
Query: 25 FGDKVTAAG---KVNLFHNDNHDITAKAF 102
F ++ T++G KV LFH N+ TAK+F
Sbjct: 35 FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 121 LAYFWWRKPSL*CRGYRCGRDSLCRQLS 38
L YFW +PS C + R+ C++++
Sbjct: 31 LNYFWGGQPSPRCNDLQSHREKFCKRVA 58
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 22 GFGDKVTAAGKVNLFHNDNHDITAKAFAT 108
G D +T G VN+FHN D+ +++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639
>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
Length = 788
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 222 EVRVSGGR*CT--NLIFEHIVYSATDSVEVGYI 130
+VR++GG + N + E +VY A + +EV Y+
Sbjct: 201 QVRLAGGIGVSVVNYVPEELVYGALEQIEVDYV 233
>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 13 HIPGFGDKVTAAGKVNLFH 69
H F D T A K NLFH
Sbjct: 30 HASSFSDDTTEAPKANLFH 48
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 178 KDKIGASATAAHTDFINRNDYSLD 249
K++ A A AAH + RND S+D
Sbjct: 193 KEETAALADAAHREVQRRNDASMD 216
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 3 HGYTHPRVRRQGDSC 47
H YTH VR GD+C
Sbjct: 265 HNYTHLAVRYYGDAC 279
>SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 755
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/30 (23%), Positives = 21/30 (70%)
Frame = -2
Query: 128 AISGIFLVAKAFAVMSWLSLWKRFTLPAAV 39
A++G+F++ ++ ++ L +++ T+P A+
Sbjct: 624 ALNGLFVLGRSIGFIAILGIYRSVTIPLAI 653
>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 3 HGYTHPRVRRQGDSC 47
H YTH VR GD+C
Sbjct: 265 HNYTHLAVRYYGDAC 279
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 136 PNFNTVGGGIDYMFKDKI 189
P N GGG+ +FKD++
Sbjct: 247 PRLNAKGGGVALLFKDRL 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,289
Number of Sequences: 59808
Number of extensions: 198171
Number of successful extensions: 577
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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