Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D01
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35577| Best HMM Match : RVP (HMM E-Value=3e-05)                     30   1.2  
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)                 30   1.2  
SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)                 30   1.2  
SB_53100| Best HMM Match : HMD (HMM E-Value=2.8)                       28   3.6  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   4.7  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39)                 27   8.3  
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_35577| Best HMM Match : RVP (HMM E-Value=3e-05)
          Length = 349

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
           LG+ +K FL   T KG+ QYN  P         F S++D +      ++ + +++ +TG 
Sbjct: 279 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 338

Query: 274 KNQK 285
            NQK
Sbjct: 339 NNQK 342


>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
          Length = 1425

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112  LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
            LG+ +K FL   T KG+ QYN  P         F S++D +      ++ + +++ +TG 
Sbjct: 1195 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 1254

Query: 274  KNQK 285
             NQK
Sbjct: 1255 NNQK 1258


>SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
           LG+ +K FL   T KG+ QYN  P         F S++D +      ++ + +++ +TG 
Sbjct: 136 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVCYIDDILITGR 195

Query: 274 KNQK 285
            NQK
Sbjct: 196 NNQK 199


>SB_53100| Best HMM Match : HMD (HMM E-Value=2.8)
          Length = 159

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
           LG+ +K FL   T KG+ QYN  P         F S++D +      ++++ +++ +TG 
Sbjct: 19  LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKGIDGVVYYIDDILITGR 78

Query: 274 KNQK 285
            +Q+
Sbjct: 79  SDQE 82


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 453  ISILCSSYASCLCCVS 406
            +S+ C S  SCLCCV+
Sbjct: 1984 LSVTCGSACSCLCCVN 1999


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 172 IRPIDPW--FISSLDVLADEDMR-LLFHFNNVSVTGLKNQKIFDFRIDTKTKSVVLK 333
           I  +  W  F++      + D R + F F+N   T +KN KI D+R++  + S  +K
Sbjct: 652 IEAVRKWRHFLAGRHFTLETDQRSVAFMFDNRKRTKVKNNKIQDWRLELASFSYTVK 708


>SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39)
          Length = 872

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
           LG+ +K FL   T KG+ QYN  P         F S++D +      ++ + +++ +TG 
Sbjct: 194 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKSIDGVVCYIDDILITGR 253

Query: 274 KNQK 285
            +Q+
Sbjct: 254 NDQE 257


>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 112 LGQSTKVFLE-KTSKGIKQYNIRPI-----DPWFISSLDVLADEDMRLLFHFNNVSVTGL 273
           LG+ +K FL   T KG+ QYN  P         F S++D +      ++ + +++ +TG 
Sbjct: 725 LGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQSTIDTILKSIDGVVCYIDDILITGR 784

Query: 274 KNQK 285
            +Q+
Sbjct: 785 NDQE 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,021
Number of Sequences: 59808
Number of extensions: 320751
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)