Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C21
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 56 1e-08
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 9e-07
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 43 1e-04
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 43 1e-04
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 40 7e-04
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 40 0.001
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) 38 0.004
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 37 0.007
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 37 0.007
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2) 36 0.016
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 35 0.028
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.064
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 29 2.4
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 29 2.4
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_15109| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7) 27 5.6
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_40709| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7) 27 5.6
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.7
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAA 183
E+A + GY+ +++ + + I +YP N A D MQ D +CCG GP DW
Sbjct: 450 EIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA--IDAMQMDFECCGAKGPSDWTF 507
Query: 184 HN----LTIPNTCCTGQEINDGVL 243
+ P +CC G+ ND L
Sbjct: 508 YGQMKYKAGPGSCC-GKPNNDACL 530
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 52.8 bits (121), Expect = 1e-07
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Frame = +1
Query: 25 GYVKHKDLETSIVKHLNETIAQYPTN--KDVARTFDIMQTDLQCCGINGPEDWAAHNLT- 195
GYV +E + K +N+TI Y + + +D +Q +CCGING +DW T
Sbjct: 376 GYVYRNKVEEQLGKDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTK 435
Query: 196 -----IPNTCCTGQEINDGVLVACTKDTPGFHTKGCLNELVAHLKDXXXXXXXXXXXXXX 360
+P++CC + ++ G + ++ +TKGC + + LKD
Sbjct: 436 GNHSIVPDSCC--KTVSKGCGINFKEN--DIYTKGCFDTVKTLLKDNLIIIGGIGIGVAV 491
Query: 361 XXXXXXXFACCLARSIRSQYE 423
FA L I +Q E
Sbjct: 492 IQILAMIFAMVLVCKIGAQSE 512
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 50.0 bits (114), Expect = 9e-07
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAA 183
E+ G Y +E + K + + I YP + ++ + MQT +CCG + DW +
Sbjct: 97 EIVGGALAYNNKDKIENRLDKDILKAIENYPGKNE--KSINDMQTKFKCCGADNYTDWQS 154
Query: 184 -----HNLTIPNTCCTGQEINDGVLVACTKDTPGFHTKGC 288
++ ++P++CC ++ G V KD +TKGC
Sbjct: 155 NIKMKNSSSVPDSCCKSEKAGCG--VGGVKDPKDIYTKGC 192
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +1
Query: 124 DIMQTDLQCCGINGPEDW-AAHNL----TIPNTCCTGQEINDGV 240
D MQ ++CCGI EDW ++ NL +P++CCT E + G+
Sbjct: 243 DDMQKTVKCCGITTYEDWKSSDNLGLTDNVPDSCCTTVEKDCGM 286
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 7 LAVGIAGYVKHKDLETSIVKHLNETIAQY--PTNKDVARTFDIMQTDLQCCGINGPEDWA 180
+ G G+ LET + L + I Y PT D+ D +QT+LQCCG+ G DW
Sbjct: 148 IVCGGLGFYYKDVLETKVTAQLKDAIVLYRDPTKGDLHLIIDTVQTELQCCGVQGLNDWD 207
Query: 181 AH 186
A+
Sbjct: 208 AN 209
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAA 183
+LA+G+ +V +E IV+ L + +Y N D+ D +Q + +CCG G DW
Sbjct: 90 QLALGVFVFVFQDKVEAVIVEKLQTAVTKYRDNADLQNLIDGVQQEFKCCGAKGINDW-D 148
Query: 184 HNLTIPNTCCTGQEINDGVLVACTKDT 264
N+ N G E C KDT
Sbjct: 149 KNIYF-NCSSPGSEACGVPYSCCIKDT 174
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 42.7 bits (96), Expect = 1e-04
Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Frame = +1
Query: 40 KDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDW--------AAHNLT 195
K ++T + L+ + YP + ++ MQ +L+CCG DW N +
Sbjct: 247 KTIKTGLSDGLDTALKDYP-EQGFKDAWNDMQKNLKCCGSRNYTDWFMVAWAGPNTKNGS 305
Query: 196 IPNTCCTGQEINDGVLVACTKDTPGFHTKGCLNELVAHLKDXXXXXXXXXXXXXXXXXXX 375
+P +CC ++ L + +GC V + +D
Sbjct: 306 VPESCCKDTKVKSCNLEVLSHPETINSEQGCYGAAVKYFEDKLVIIGGVALGLAVFQLIG 365
Query: 376 XXFACCLARSIRS--QYETV 429
F+CCLA ++ + +YE V
Sbjct: 366 IAFSCCLASTLHNNLKYELV 385
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Frame = +1
Query: 7 LAVGIAGYVKHKDLETSIVKHLNETIAQY---PTNKDVARTFDIMQTDLQCCGINGPEDW 177
+A G Y + KD ++ + L + + +Y P N+D+ D MQT L+CCG+ +DW
Sbjct: 122 IACGAVAYTQ-KDKVQALKERLKQDLKKYLDDPLNQDL---IDFMQTLLKCCGVESYKDW 177
Query: 178 AAHNLTIPNTCCTGQEINDGVLVACTKDTPGFH 276
A+ C + ++ GV +C K++ F+
Sbjct: 178 QANPYF---NCSSPGRMSCGVPFSCCKESIQFN 207
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +1
Query: 7 LAVGIAGYVKHKDLETSIVKHLNETIAQY--PTNKDVARTFDIMQTDLQCCGINGPEDWA 180
++ GIA Y+ H+D +V+ L + + Y P ++ D +QT+L+CCG+N DW
Sbjct: 126 VSAGIAVYM-HQD---KVVEKLKDDLKHYRDPDKENFQFLIDRLQTNLKCCGVNSYTDWQ 181
Query: 181 AHNLTIPNTCCTGQEINDGVLVACTKDT 264
+ I C + + GV +C K++
Sbjct: 182 TN---IYFNCSSPGSESCGVPFSCCKES 206
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 31 VKHKD-LETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAAH-----NL 192
VK KD +E+ + K L + V + FD +Q +CCG+NG DW A
Sbjct: 120 VKVKDEIESDLTKALKGDYGSSGQD-GVTKAFDALQEKQKCCGVNGYLDWKASKKYNGTS 178
Query: 193 TIPNTCC 213
T+P++CC
Sbjct: 179 TVPDSCC 185
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 7 LAVGIAGYVKHKDLETSIVKHLNETIAQY--PTNKDVARTFDIMQTDLQCCGINGPEDWA 180
++ G A Y+ H+D +V L + + Y P ++ D +QT+L+CCGIN DW
Sbjct: 126 VSAGTAVYI-HRD---KVVAKLKDDLQHYRDPDKENFQFLIDRLQTNLKCCGINSYNDWQ 181
Query: 181 AHNLTIPNTCCTGQEINDGVLVACTKDT 264
+ + C + + GV +C K++
Sbjct: 182 TN---VYFNCSSPGSESCGVPFSCCKES 206
>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
Length = 691
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAA 183
E+A G Y LE + L + Y K+ + D +Q + +CCG D
Sbjct: 417 EIAAGALAYAYKGKLEGYVRTGLKNGVDHYD-KKEYKKAMDKVQGEFKCCGYEDSNDHGY 475
Query: 184 HNLTIPNTC 210
N T+P +C
Sbjct: 476 KNSTVPKSC 484
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 37.1 bits (82), Expect = 0.007
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Frame = +1
Query: 46 LETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGI-NGPEDWA-----AHNLTIPNT 207
+ SI+ L I +P R D +Q LQCCG +GP DW + ++P++
Sbjct: 64 INRSILADLKNRIKNFPGPG--TRVVDSIQERLQCCGADSGPNDWMNNKHFLQSASVPDS 121
Query: 208 CCTGQEIND-----GVLVACTKDTPGFHTKGCLNELVAHLKD 318
CC QE + G ++A T+ HT+ C ++ L D
Sbjct: 122 CCK-QEYREKDCGLGQIIANTR----IHTEPCASKYKNMLDD 158
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 37.1 bits (82), Expect = 0.007
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKD--VARTFDIMQTDLQCCGINGPEDW 177
E+ + YV + +E ++ + T+ +Y + V R D + D +CCG DW
Sbjct: 102 EVTAIVLAYVYRERIEKNLHGDIRSTMNEYHLSGHDAVTRAIDEIHRDFKCCGNAQYRDW 161
Query: 178 ------AAHNLTIPNTCC---TGQEINDGVLVACTKDTPGFHTKGCLNELVAHLKDXXXX 330
H +P +CC + + N+ + +KD + +GC + +L +
Sbjct: 162 FETKWAKTHPDMVPRSCCKDPSDSKCNENI----SKDPTKIYRRGCYMFVKKYLSNNLHV 217
Query: 331 XXXXXXXXXXXXXXXXXFACCLARSIRS 414
FA CL IR+
Sbjct: 218 ISGFGIWIAVIQLMGIIFATCLCCHIRT 245
>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
Length = 108
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Frame = +1
Query: 16 GIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAAH--- 186
G+ + ++ S+ +++ I Y N D+ D +Q + +CCG + DW A+
Sbjct: 26 GLLAFAFWPNVRKSVQNQISKGIVNYRDNLDLQNIIDGIQENFKCCGSSSINDWDANRYF 85
Query: 187 --------NLTIPNTCCTGQE 225
+P+TCC ++
Sbjct: 86 KCGGPSPEECGVPHTCCVKKD 106
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 35.1 bits (77), Expect = 0.028
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +1
Query: 7 LAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAAH 186
+A G+ +++ + L + L + + Y + D +QT +CCGI +DW A+
Sbjct: 117 IAAGVLAFLQREKLVDPKAR-LEDGLKSYQQDSSKQEFIDFIQTRFKCCGIESYKDWQAN 175
Query: 187 NLTIPNTCCTGQEINDGVLVACTK 258
+C + GV +C K
Sbjct: 176 RYF---SCSSPVPTACGVPFSCCK 196
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 33.9 bits (74), Expect = 0.064
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDW-- 177
E+ G + ++ + + + + Y + D+ D +Q++L+CCG DW
Sbjct: 31 EIIAGFLSFFFVEETRSKVSSAIKLFVVHYQDDLDLQNAIDGIQSNLKCCGGYSYHDWNH 90
Query: 178 ---------AAHNLTIPNTCCTGQEIN 231
A +P++CC +IN
Sbjct: 91 NKYFNCSAQAVEACGVPHSCCVEDQIN 117
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Frame = +1
Query: 130 MQTDLQCCGINGPEDWAA--------HNLTIPNTCCTGQEINDGVLVACTKDT--PGFHT 279
M L+CCG P DW + +P +CCT + N C KD ++
Sbjct: 342 MLATLKCCGGERPGDWLGSKWKRDLNKDKIVPLSCCT-ENANK---TTCYKDDTYKEVYS 397
Query: 280 KGCLNEL 300
GC+NEL
Sbjct: 398 SGCVNEL 404
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 28.7 bits (61), Expect = 2.4
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Frame = +1
Query: 4 ELAVGIAGYVKHKDLETSIVKHLNETIAQYPTNKDVART-FDIMQTDLQCCGINGPEDWA 180
E+ V + G ++ + T + +N ++ D R D +Q +L+CCG DW
Sbjct: 141 EIIVMVFGIIQSSRVPTDTREIVNWSVFILNYQDDSIRDDLDSIQKNLKCCGFKDYNDWE 200
Query: 181 AH-----------NLTIPNTCC----TGQEINDGVLVACTKDTPG--FHTKGCLNEL 300
+ ++P +CC +G GV A G H GCL+ +
Sbjct: 201 LNPYYSCKSNGYSRCSVPASCCKLDISGSRCTLGVRDATKTSEIGQFIHKNGCLDTI 257
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -3
Query: 321 DILEVSDQFVQAAFSMETGCVLSASDQNTIVDLLSGAASVRDGQVVRC 178
D+++++D++ + F + S + NTI+ +LSG +R VV C
Sbjct: 348 DLIDMADRYNKTPFCLAK----SGNADNTIISILSGYRMLRQKSVVDC 391
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 321 DILEVSDQFVQAAFSMETGCVLSASDQN 238
D+L V ++ QAAF+ C+L DQ+
Sbjct: 754 DVLSVDERLTQAAFAHHRKCILKRPDQD 781
>SB_15109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 61 VKHLNETIAQYPTNKDVARTFDIMQTDLQCCGINGPEDWAAHNLTIPNT 207
V L+E + Q T K + +TD+Q CG EDW + L + T
Sbjct: 12 VPKLSEKLDQLDTTKTFEPIEPVRETDIQVCG-ETMEDWYGYVLILLKT 59
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 321 DILEVSDQFVQAAFSMETGCVLSASDQN 238
D+L V ++ QAAF+ C+L DQ+
Sbjct: 868 DVLSVDERLTQAAFAHHRKCILKRPDQD 895
>SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)
Length = 442
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 194 VRLCAAQSSGPLIPQHCKSVCMMSNVLATSLFVGYCAIVSLRCFTID 54
+RLC G ++ + V ++S VLA+ L GY I +L+ F ++
Sbjct: 210 IRLCDRALYG-ILENPDQEVILLSQVLASELTTGYENIANLQLFKVN 255
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 242 RTPSLISCPVQQVLGMVRLCAAQSSGP--LIPQHCKSVCMMSNVLATSLFVGYCAI 81
R P +SCPV M+RL A + P L+ H + + T + C++
Sbjct: 2251 RIPGSLSCPVAAYNNMIRLVPASARKPLFLLLGHSGPFALTKSRFVTEFRLALCSV 2306
>SB_40709| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)
Length = 402
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 194 VRLCAAQSSGPLIPQHCKSVCMMSNVLATSLFVGYCAIVSLRCFTID 54
+RLC G ++ + V ++S VLA+ L GY I +L+ F ++
Sbjct: 170 IRLCDRALYG-ILENPDQEVILLSQVLASELTTGYENIANLQLFKVN 215
>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 90 LRDCLVEVFHDRCLEVLVLHVTSDTDS 10
L DC +EV+HD ++ LH+ S D+
Sbjct: 57 LFDCKIEVYHDMEQRIIYLHLQSLYDA 83
>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 135 LHDVERSSDILVCRVLRDCLVEVFHDRCLEVLVLHVTSDTDSEL 4
L + RS D + R + D ++++ D CLEV V V +DT S L
Sbjct: 998 LFTITRSPDYI--RQVHDLVLDMLEDECLEVRV--VAADTFSGL 1037
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 393 AAGEYHTQELN*SDAEPDSSEHYSDILEVSDQFVQAAFSMETGCVLSASDQ 241
+A YH++ LN ++ + +S + DQ++Q F M+T + + Q
Sbjct: 122 SASSYHSKSLNPQNSRLNGDRSWSAKMNGKDQWIQVDF-MQTAKITQVATQ 171
>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 321 DILEVSDQFVQAAFSMETGCVLSASDQN 238
D+L V ++ QAAF+ C+L D +
Sbjct: 870 DVLSVDERLTQAAFAHHRKCILKRPDHD 897
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,774
Number of Sequences: 59808
Number of extensions: 295040
Number of successful extensions: 753
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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