Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C18
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                  113   7e-26
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       27   5.6  
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   5.6  
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)                27   7.4  
SB_1189| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)                 26   9.8  
SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)                 26   9.8  
SB_9208| Best HMM Match : p450 (HMM E-Value=0)                         26   9.8  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score =  113 bits (271), Expect = 7e-26
 Identities = 46/89 (51%), Positives = 63/89 (70%)
 Frame = +2

Query: 14  IMTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKDASWVQQEQH 193
           +++  R++IYGG+GALG+ CV++FK+  WWVA++DL PNE A  NV V    SW +Q   
Sbjct: 90  VVSGSRVLIYGGKGALGATCVSYFKAREWWVASVDLFPNEEAHANVIVDPAKSWDEQNNE 149

Query: 194 VVNELSNALQGQKVNAVICVAGGWAGGNA 280
           V  ++   L G K+NA+ICVAGGWAGG A
Sbjct: 150 VQKKVDELLDGNKLNAIICVAGGWAGGTA 178


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 107 ANIDLNPNESADF-NVAVPKDASWVQQEQHVVNELSNALQGQKVNAVICVAGGWAGGNAA 283
           AN+ +  N    F + ++  D     ++QHV+ EL+    G K +      GG + GN  
Sbjct: 741 ANLHVRQNRDDTFEDRSLDLDYDDESEQQHVLTELARVTLGSKGSEKTNEIGGESSGN-R 799

Query: 284 KDLSKQADLMW 316
           KD  K    MW
Sbjct: 800 KD--KSVAKMW 808


>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1106

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 107 ANIDLNPNESADF-NVAVPKDASWVQQEQHVVNELSNALQGQKVNAVICVAGGWAGGNAA 283
           AN+ +  N    F + ++  D     ++QHV+ EL+    G K +      GG + GN  
Sbjct: 757 ANLHVRQNRDDTFEDRSLDLDYDDESEQQHVLTELARVTLGSKGSEKTNEIGGESSGN-R 815

Query: 284 KDLSKQADLMW 316
           KD  K    MW
Sbjct: 816 KD--KSVAKMW 824


>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
          Length = 314

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 395 SRQVIHPAPSILQLMWLRLSNSRPIAATSSLP 300
           SRQ+    P++L  ++   SN +P+ A   LP
Sbjct: 140 SRQMPQFPPNVLNYVYASTSNRKPVTANRGLP 171


>SB_1189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 181 LYPRGIFRHGNVEISTFIWVK--VYICDPPVG 92
           L P+GI R+ NV+ + F  +K  + +CD P G
Sbjct: 89  LDPQGILRNSNVDCTIFGELKYLLLVCDLPTG 120


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 229 ESECCYLRRWWLGRRKRCQGPE*AGRLDV 315
           E E C ++R W  R+KR  G    G  DV
Sbjct: 162 EEESCQIQRKWTQRKKRHYGKRYGGFADV 190


>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
          Length = 509

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 95  NWWVANIDLNPNES--ADFNVAVPKDAS 172
           +WWV+NID++ N++     ++ +  DAS
Sbjct: 350 DWWVSNIDISFNDTNRPPIDITIYSDAS 377


>SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 95  NWWVANIDLNPNES--ADFNVAVPKDAS 172
           +WWV+NID++ N++     ++ +  DAS
Sbjct: 151 DWWVSNIDISFNDTNRPPIDITIYSDAS 178


>SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)
          Length = 908

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 107 ANIDLNPNESADF-NVAVPKDASWVQQEQHVVNELSNALQGQKVNAVICVAGGWAGGNAA 283
           AN+ +  N    F + ++  D     ++QHV+ EL+    G K +      GG + GN  
Sbjct: 480 ANLHVRQNRDDTFEDRSLDLDYDDESEQQHVLTELARVTLGSKGSEKTNEIGGESSGN-R 538

Query: 284 KDLS 295
           KD S
Sbjct: 539 KDKS 542


>SB_9208| Best HMM Match : p450 (HMM E-Value=0)
          Length = 544

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 216 LCKVRK*MLLFASLVVGQAETLPRT*VSRQT 308
           +C   +  LLF     G+AET PRT  S+ T
Sbjct: 65  ICNAPRNSLLFWQAQYGKAETSPRTRTSKAT 95


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 226 SESECCYLRRWWLGRRKRCQGPE 294
           SE   C   R W G   RC+G E
Sbjct: 425 SEVRACQANRTWSGMNTRCEGME 447


>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 382 STRRQVFCS*CGCDCRTPDRLPPH 311
           ++  Q  C  CG D  TP+RL  H
Sbjct: 99  TSNSQCMCGNCGKDMATPERLAKH 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,737
Number of Sequences: 59808
Number of extensions: 267177
Number of successful extensions: 679
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)