Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C13
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              36   0.025
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 27   8.6  
SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)             27   8.6  
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     27   8.6  

>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +1

Query: 160 PPGTGQDASWLCRQRLPLVVTETSGSRR*RPANYLLLVDDYCEEKHCPGSIPGKE 324
           PP  G D+ +L   +L   +T T  ++  R    LL  DD  E  H PG I   E
Sbjct: 387 PPSAGSDSDYLDEVQLQRKLTATFAAQSSRDGQTLLKADDMAERPHNPGYIADSE 441


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 437 QWCRTGSPEISPDTSTRVAVDTTATPVKCYRRVLPT 544
           QWC    P + P+ S R+ VD  A      R V PT
Sbjct: 323 QWCSGMVPVLKPNGSVRICVDLVALNRNVQREVHPT 358


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 510 HRLNATGECCQQCAPGTWQ 566
           +RL  TG  C++C PGT++
Sbjct: 203 NRLRKTGASCEKCPPGTYK 221


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 142 VTELRSPPGTGQDASWLCRQRLPLVVT 222
           V+ L  PPGTG+  S LC  R  L V+
Sbjct: 866 VSRLEGPPGTGKTTSILCLARALLGVS 892


>SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 519 NATGECCQQCAPGTWQRTVEDL 584
           N+  EC + C P TW R V+ L
Sbjct: 289 NSKVECLKDCKPATWWREVKKL 310


>SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)
          Length = 378

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 535 HSPVAFNRCCSRVNSNPGRRVWTNLRRTC---PAPLESGALPIRCLLSP 398
           H PV +N      N+NP    + N++R C   P P E   +   C  +P
Sbjct: 183 HCPVEYNNMNRVCNTNPCPGEYNNMKRVCNTNPCPGEYNNMKRVCNTNP 231


>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 496 NSNPGRRVWTNLRRTCPAPLESGALPIRCLLSP 398
           N+ PG R W  L +   AP+ SG   + C+L P
Sbjct: 29  NAPPGTRDW--LIKLIRAPVASGGAGLECILEP 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,981
Number of Sequences: 59808
Number of extensions: 327933
Number of successful extensions: 1198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)