Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C01
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                29   2.2  
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)           27   9.0  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 326 YLCDVAMFVICSDNTTRSVINHASSTGNSVAMSDGLEFCS 207
           Y  + ++   CS N+T  V N A  + NS +    + FCS
Sbjct: 21  YFSNASLAAFCSTNSTSGVSNIAFCSANSTSGVSNMAFCS 60


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 275 SVINHASSTGNSVAMSDGLEFCSKRYHIID 186
           ++I++ S TGN + +  GL +C K Y++ D
Sbjct: 94  NMISNLSHTGNPIQLPYGLAWCGKYYNMCD 123


>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
          Length = 410

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 YASCGVVATNDEHCHVTEIDPKKPYPECCPDIKC 371
           YA   +    D++C+VT IDPK  +      ++C
Sbjct: 56  YAGITLAGKLDDYCNVTLIDPKDCFHHSIGALRC 89


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 254 STGNSVAMSDGLEFCSKRYHIIDFFYVAAFLMCQFLW 144
           STGN  A++ G  F  + Y+ +  FY+ A L     W
Sbjct: 41  STGNFSALTVGFRFRREVYYYLFRFYIPASLTVVMSW 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,864
Number of Sequences: 59808
Number of extensions: 341052
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)