Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B03
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   1e-42
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        77   8e-15
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        33   0.23 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          31   0.70 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   8.7  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  169 bits (412), Expect = 1e-42
 Identities = 79/139 (56%), Positives = 98/139 (70%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
           +   LFK+L KYRPET                   +E P K+P  ++ G N +T LVE K
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENK 150

Query: 534 KAQLVVIAHDVDPIELVLF 590
           KAQLVVIAHDVDPIE+V++
Sbjct: 151 KAQLVVIAHDVDPIEIVVW 169


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 37/75 (49%), Positives = 46/75 (61%)
 Frame = +3

Query: 366 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 545
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 546 VVIAHDVDPIELVLF 590
           VVIAHDVDPIE+V++
Sbjct: 64  VVIAHDVDPIEIVVW 78


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 587
           LR G N  TK + +  A+ +V+A D +P+E++L
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILL 126


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 34/115 (29%), Positives = 47/115 (40%)
 Frame = +2

Query: 104  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 283
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 284  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASKESRRSQG 448
              VT SS+     +P H   R      S       Q R   S  R  ++ RRS+G
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG 1087


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 477 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELV 584
           +  TLR G   V K + K +   V++A DV PI+++
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVI 130


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 110 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 205
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 237 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 386
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 236 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 394
           +P     +   HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,797
Number of Sequences: 59808
Number of extensions: 298993
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)