Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C10
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45113| Best HMM Match : CemA (HMM E-Value=6)                        30   2.7  
SB_30309| Best HMM Match : TatC (HMM E-Value=1.6)                      28   8.3  
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11385| Best HMM Match : MFS_1 (HMM E-Value=0.066)                   28   8.3  

>SB_45113| Best HMM Match : CemA (HMM E-Value=6)
          Length = 363

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 571 GKEGACSVYSRETRPLYRREESTL*GESARTSALHRSKRKFPLPSRNTSNT 723
           G+E ACS  S +T   Y  EES   G+ A     H  KRK   P+  T+ T
Sbjct: 97  GEEEACS--SMDTSQ-YEEEESASKGQEANPHPPHGRKRKRKRPTATTATT 144


>SB_30309| Best HMM Match : TatC (HMM E-Value=1.6)
          Length = 349

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 716 DVFLDGKGNFLFXRCRAXVRALSPHRVLSSRRYRGRVSRLYT 591
           D+F DGK N    +    + A+ PH VL ++ Y  R S+L T
Sbjct: 215 DIF-DGKDNLGSLQKTRRLMAVVPHHVLINQIYTNRESKLQT 255


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 694 GTFFSXGVGLXYGHFHLIGYFLLDGI 617
           GT  S    L YGH ++  Y LLDGI
Sbjct: 759 GTSMSLAKALYYGHVYVAQYPLLDGI 784


>SB_11385| Best HMM Match : MFS_1 (HMM E-Value=0.066)
          Length = 562

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 716 DVFLDGKGNFLFXRCRAXVRALSPHRVLSSRRYRGRVSRLYT 591
           D+F DGK N    +    + A+ PH VL ++ Y  R S+L T
Sbjct: 215 DIF-DGKDNLGSLQKTRRLMAVVPHHVLINQIYTNRESKLQT 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,490
Number of Sequences: 59808
Number of extensions: 307712
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)