Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                32   0.57 
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               29   4.0  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)          29   7.0  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 29   7.0  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 600

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
 Frame = +1

Query: 106 SPLRLRESSPPRHMHSP-LRQSPSCYDADSLAQSN-----TVYVPN---YPQVEAGGTTD 258
           SPL L  + PP++   P L++SPS  DAD+L +        V +P+   +P VE   + D
Sbjct: 444 SPLTLNRAPPPKNRRRPSLKKSPSGDDADNLNEIERDLPLEVNIPDKFVHPLVEEAKSRD 503

Query: 259 PEA 267
           P A
Sbjct: 504 PVA 506


>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 118 LRESSPPRHMHSPL-RQSPSCYDADSLAQSNTVYVPNYPQVEAGGTTDP 261
           LR SS    ++S   RQSP C + D LA S+ + V  + Q+ +G  T P
Sbjct: 338 LRSSSAVCSLNSTTPRQSPGCSNTDELADSSYMIVFIFAQLLSGAGTTP 386


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 402  PRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAPQP 280
            P  + PL  P       S   P  G A  P P P GSAP P
Sbjct: 926  PGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPP 966


>SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 486 CAARHXERHGALVRGARHGHAVH*RQQVPRADQPLRRPARHDVTD 352
           C  RH  RH    R  R       R+  PR  +P RRP RHD  D
Sbjct: 5   CDHRHHRRHSRRRRRPR-------RRARPRRRRPCRRPRRHDDDD 42


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 194 WLSPIPSTCRTTRRSKPVARRTLRQTYWCGWGA 292
           W+  + +TC  TRR  P+  R L+      W A
Sbjct: 366 WIDDVAATCGLTRRQGPICTRILKLVQVRDWSA 398


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 245 VARRTLRQTYWCGWGAEPR 301
           V  R  RQ YW  WGA PR
Sbjct: 748 VLARARRQMYWTDWGANPR 766


>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
          Length = 772

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 245 VARRTLRQTYWCGWGAEPRGSGSGSWAAP 331
           + +R  +   WCGW  E   S  G+W AP
Sbjct: 469 IIQRCDKSLPWCGWQTE-SSSDEGAWVAP 496


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 100 KGSPLRLRES---SPPRHMHSPLRQSPSCYDADSLAQSNTVY 216
           K SPL    S   S P H  SPL +S   Y + SL +S+++Y
Sbjct: 693 KSSPLYKSSSLYKSSPLHKSSPLYKSSPLYKSSSLYKSSSLY 734


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 245 VARRTLRQTYWCGWGAEPRGSGSGSWAAP 331
           + +R  +   WCGW  E   S  G+W AP
Sbjct: 166 IIQRCDKSLPWCGWQTE-SSSDEGAWVAP 193


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 299 AAPRPSRTSTSASGSVVP--PASTCG*FGT*TVLD*ANESAS*QDGDCLNGECMCLGGED 126
           +A   S T+ + S  + P  P STCG   T    D    +   ++   +NGE  C G   
Sbjct: 549 SATSDSVTAQNTSSKISPRHPGSTCGTVRTSPASDTIPSNRGPRERVEMNGEAPCPGSSS 608

Query: 125 SRNLRG 108
           S  L G
Sbjct: 609 STTLTG 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,997
Number of Sequences: 59808
Number of extensions: 352918
Number of successful extensions: 1212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)