Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B22
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 466  PWAIAKLLTTLCSQVSIWKVPVSYAHTG 549
            P +  K L  + + VSIWKVPVSYAHTG
Sbjct: 1665 PLSFGKALAAVSAYVSIWKVPVSYAHTG 1692



 Score = 33.5 bits (73), Expect = 0.24
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 209  IKKRAMGT-SG--SRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQ 367
            I+ +A GT SG  S  E+L V  L  ++  +SS +NV+ K  L + P P+T+  VQ
Sbjct: 1576 IRTQADGTRSGHSSSSESLFVAILHRSFPAVSSTNNVITKRLLNKFPHPVTVAFVQ 1631


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 419  RSTRWPTNYWTRV-LXTLGRSPNFLPHCARKFPFGKCQ--SPMPTQVC 553
            +  R P +Y   V +   GR P +   CA K P+  CQ  +  PT VC
Sbjct: 3923 QDARRPNDYRELVQVIIFGRDPCYASDCAEKRPYSTCQAVNGQPTCVC 3970


>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 378 AAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVS 247
           A H   AV++S NG++ ++           IYH     PT   S
Sbjct: 66  ATHGTPAVLISNNGTNYSSQEFREFTKAWEIYHVTRNSPTPGTS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,733,608
Number of Sequences: 59808
Number of extensions: 507246
Number of successful extensions: 1073
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)