Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A21
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   34   0.16 
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               33   0.21 
SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               33   0.21 
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3)                      32   0.48 
SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)           31   0.84 
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)                     30   1.9  
SB_58777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43917| Best HMM Match : RCSD (HMM E-Value=2.4)                      29   3.4  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   5.9  

>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTLSRKR 737
           +VP+ V V+    +  ++  P P+ V + I + V+VP+P P     R
Sbjct: 265 RVPFPVMVNRPVHHTERIPFPVPFVVNRPIHHTVQVPYPVPVRGPSR 311



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 600 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSP 719
           +P+   + VD P     +VP P  V + + +  ++PFP P
Sbjct: 248 MPFSNMMAVDAPVHHVDRVPFPVMVNRPVHHTERIPFPVP 287


>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 597  KVPYEVKVHVDKPYEVKVKVPTPYTV--EKKIPYEVKVP 707
            KVP EVKV  +     +VKVP  + V  E K+P EVKVP
Sbjct: 988  KVPDEVKVPDEDKVPDEVKVPDEFKVPDEVKVPDEVKVP 1026



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 597  KVPYEVKVHVDKPYEVKVKVPTPYTV--EKKIPYEVKVPFPSP 719
            KVP EVKV  +     +VKVP    V  E K+P EVKV   +P
Sbjct: 1000 KVPDEVKVPDEFKVPDEVKVPDEVKVPDEVKVPDEVKVSDKAP 1042


>SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 359

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTV--EKKIPYEVKVP 707
           KVP EVKV  +     +VKVP  + V  E K+P EVKVP
Sbjct: 239 KVPDEVKVPDEDKVPDEVKVPDEFKVPDEVKVPDEVKVP 277



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTV--EKKIPYEVKVPFPSP 719
           KVP EVKV  +     +VKVP    V  E K+P EVKV   +P
Sbjct: 251 KVPDEVKVPDEFKVPDEVKVPDEVKVPDEVKVPDEVKVSDKAP 293


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
 Frame = -3

Query: 617 LDFIRYFPFNGVRFRYVYWVF-------DVFLDGKGNFLFDGVGLRYGHFHLIGYFLLDG 459
           L  + YF   GVR+R + W         D   D  G  +     L YGH ++  Y LLDG
Sbjct: 724 LQRVSYFRNTGVRWRSLSWKLNSTFDWEDAIQDAMGTSMSLAKALYYGHVYVAQYPLLDG 783

Query: 458 I 456
           I
Sbjct: 784 I 784


>SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3)
          Length = 112

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 594 RKVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPT 722
           R  PY  +    +P+    + P PYT  + +PY  + PFP  T
Sbjct: 11  RPFPYTTR----RPFPYTTRRPFPYTTRRPLPYTTRRPFPYTT 49



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 594 RKVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPT 722
           R  PY  +    +P+    + P PYT  +  PY  + PFP  T
Sbjct: 19  RPFPYTTR----RPFPYTTRRPLPYTTRRPFPYTTRPPFPYTT 57



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 633 PYEVKVKVPTPYTVEKKIPYEVKVPFPSPT 722
           P+    + P PYT  +  PY  + PFP  T
Sbjct: 4   PFRYTTRRPFPYTTRRPFPYTTRRPFPYTT 33


>SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKK--IPYEVKVPFPSPTLSRKR 737
           + PY  +     PY  K +  TPYT  K+   PY  +    +P ++RKR
Sbjct: 253 QTPYTTRKRGQTPYITKKRGQTPYTTRKRGQTPYITRKRGQTPYITRKR 301



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKK--IPYEVKVPFPSPTLSRKR 737
           + PY  +     PY  + +  TPYT  K+   PY  K    +P  +RKR
Sbjct: 233 QTPYITRKRGQTPYITRKRGQTPYTTRKRGQTPYITKKRGQTPYTTRKR 281


>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
          Length = 483

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 603 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFP 713
           P  +  H   P+ V+V V  P+ V  ++P  V+VP P
Sbjct: 204 PIIIHHHHHHPFPVRVPVRVPFRVPVRVPVPVRVPVP 240


>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
          Length = 399

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTLSRKRSXFQ*NTXFXVPX 776
           KVP   KV V+    V  KVP  Y V   + Y+V V +  P   +    ++    + VP 
Sbjct: 87  KVPVNYKVPVNYKVSVNYKVPVNYKV--SVNYKVPVNYKFPVNYKVSVNYKVPVNYKVPV 144

Query: 777 PYXV 788
            Y V
Sbjct: 145 NYKV 148


>SB_58777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTLSRKRSXFQ*NTXFXVPX 776
           K+P ++ + +  P ++ +K+PT  ++  KIP ++ +  P+  +S+K       T   +  
Sbjct: 35  KIPTDISIKI--PTDISIKIPTDISI--KIPTDISIKIPT-DISKKIP-----TDISIKI 84

Query: 777 PYXVXXKVP 803
           P  +  K+P
Sbjct: 85  PTDISIKIP 93



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/41 (24%), Positives = 26/41 (63%)
 Frame = +3

Query: 594 RKVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPS 716
           +K+P ++ + +  P ++ +K+PT  ++  KIP ++ +  P+
Sbjct: 74  KKIPTDISIKI--PTDISIKIPTDISI--KIPTDISIKIPT 110



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +3

Query: 597 KVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPS 716
           K+P ++ + +  P ++ +K+PT  ++  KIP ++ +  P+
Sbjct: 27  KIPTDISIKI--PTDISIKIPTDISI--KIPTDISIKIPT 62


>SB_43917| Best HMM Match : RCSD (HMM E-Value=2.4)
          Length = 367

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 460 PSRRKYPMR*KCPYLSPTPSKRKFPLPSRNTSNTQYTYLNLTPLKGKY 603
           P R+ Y    + P  S  PS    PL +R      +  L+L PL+GK+
Sbjct: 62  PRRKPYVRNFELPAQSGLPSLPCRPLNARQRRQQHHNNLDLKPLRGKH 109


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 216  FRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCT 43
            + D R   R+ +    HK   HRCP  L  S++  + C  P +    R T  P  P T
Sbjct: 1146 YADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVK-KTACDWPRYVDCDRTTSTPPTPTT 1202


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 603 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTL 725
           P   K H  KP+  K     P+T +   P+ +    PSPTL
Sbjct: 161 PPTTKPHTTKPHTTKPHTTKPHTTK---PHNIDPTLPSPTL 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,904
Number of Sequences: 59808
Number of extensions: 392150
Number of successful extensions: 1413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)