Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A16
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   2e-42
SB_11703| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.031
SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.042
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.29 
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)                33   0.29 
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      31   0.89 
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 31   1.2  
SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)                  31   1.2  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   29   3.6  
SB_11765| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_8287| Best HMM Match : UVR (HMM E-Value=0.07)                       29   6.3  

>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score =  169 bits (412), Expect = 2e-42
 Identities = 85/177 (48%), Positives = 117/177 (66%), Gaps = 7/177 (3%)
 Frame = +3

Query: 15  ANLKLSIHGYITNVNYSNKKGILLLFINHRLVDSQAIRKAVDSVYSTYLPKNSHAFVYLS 194
           + L   + G ITN NYS KK I LLFINHRLVDS A+R+++++VY  YLPK +H FVY+S
Sbjct: 242 SRLGFYMKGCITNANYSVKKLIFLLFINHRLVDSTALRRSLETVYEAYLPKGTHPFVYMS 301

Query: 195 IELDPKNVDVNVHPTKHEVQFLYEEQIVEKIKTCIETKLLGCSSTRVLYTQARLPGAA-- 368
           +++ P NVDVNVHPTKHEV FL+E+ IVE ++ C+E KLLGC+++R  YTQA LPG A  
Sbjct: 302 LQITPSNVDVNVHPTKHEVHFLHEDAIVEAVQKCVEMKLLGCNTSRTFYTQALLPGVAGT 361

Query: 369 ---QPRDVADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNK--TKQPTGDNASDV 524
              +  DVA K + +A   A  MVR +   Q +  F + +      +  +GD+A  +
Sbjct: 362 KSSESADVAGK-SSSANVYAHQMVRTDSREQTLHAFIKPDGKSVANRNSSGDDAPSI 417


>SB_11703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +3

Query: 204 DPKNVDVNVHPTKHEVQF 257
           DP  VDVNVHP KHEV+F
Sbjct: 8   DPHQVDVNVHPAKHEVRF 25


>SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 477 EPNKTKQPTGDNASDVVNDVDQ-QQKIPS---EQDLN-NSIVKEPAEDNKVQEKWKQYTE 641
           E N+  +  GDNASD  +D D+ ++++ S   ++DL  N  +K P   +     W    E
Sbjct: 244 EVNENSENNGDNASDYSDDFDESEEEVYSDEFDEDLALNGSLKTPIPSSDATSPWNGGRE 303

Query: 642 AGQANITYVD 671
           +G   + Y D
Sbjct: 304 SGDNEVEYAD 313


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 20/101 (19%), Positives = 46/101 (45%)
 Frame = +3

Query: 381  VADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDVDQQQKIPS 560
            + D+P+ +   +A  +   N  +  +    E++P K + P   +  +++N    ++    
Sbjct: 2852 ITDRPSTSQAKAAETLRNKNVEIIAVAVGAEVQPGKLR-PLLPHGRNLINATTDERPDKK 2910

Query: 561  EQDLNNSIVKEPAEDNKVQEKWKQYTEAGQANITYVDPKDS 683
             +++     K+P EDNKV   +     +  A+ T+   KD+
Sbjct: 2911 AEEIIKQAAKDPLEDNKVDVGFAISATSKNADSTFKLMKDA 2951


>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 480 PNKTKQPTGDNASDVVNDVDQQQKIPSEQDLNNSIVKEPAEDNKVQ---EKWKQYTEAG 647
           P   K PT  + S  VND  +  KI   + L +S V E A + KVQ    +W  Y ++G
Sbjct: 308 PATPKDPTSPSESSPVNDTGKGVKI---RGLKSSDVSETAPEGKVQSRARRWGDYADSG 363


>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
          Length = 474

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 288 KTCIETKLLGCSSTRVLYTQARLPGAAQPRDVADKPTDAAKTSAAHMVRVNPNVQ 452
           KTC+E +L GC    V    A       PRDV D P D+   S   MV ++   Q
Sbjct: 40  KTCLEKQLNGCLKCPVCSEHA--VNIKSPRDVEDLPCDSLLNSVLDMVALHGGKQ 92


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 26/87 (29%), Positives = 36/87 (41%)
 Frame = +3

Query: 363 AAQPRDVADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDVDQ 542
           ++Q   V  K   AAK  A H        Q      E E NK K  TG+   ++  D ++
Sbjct: 315 SSQDTKVIKKAKKAAKKIAKHKDMPAKTKQIPGTKIEGEKNKEKNITGEMEKNIEGDGEK 374

Query: 543 QQKIPSEQDLNNSIVKEPAEDNKVQEK 623
           +QK   +     SIV    E+   QEK
Sbjct: 375 KQKKSKKDTKTKSIVINETEEQ--QEK 399


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
 Frame = +3

Query: 315 GCSSTRVL-YTQARLPGAAQPRDVADKPTDAAKTSAAHMVRVNPNVQKIDKFFEL----E 479
           GC    V  YTQ   PG A   D  D   +    S    ++  P +     FF       
Sbjct: 137 GCRKLGVKRYTQQHKPGLAVEEDKYDGNIERTSASVEQTLKNEPLLVPKPSFFSNGSIDS 196

Query: 480 PNKTKQPTGDNASDVVNDVDQQQKIPSEQDL 572
           P +T + TGD+ +   ND +     P++  L
Sbjct: 197 PLQTSKNTGDDRTSTPNDPETSSSGPNKPHL 227


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 105  LVDSQAIRKAVDSVYSTYLPKNSHAFVYLSIELDPKNVDVNV 230
            L+  ++ RKA+D V   YL  N H F Y+       NV  +V
Sbjct: 979  LMFDKSCRKAIDEVSGVYLKPNKHRFSYIYYTNSSMNVSESV 1020


>SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)
          Length = 256

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 105 LVDSQAIRKAVDSVYSTYLPKNSHAFVYLSIELDPKNVDVNV 230
           L+  ++ RKA+D V   YL  N H F Y+       NV  +V
Sbjct: 152 LMFDKSCRKAIDEVSGVYLKPNKHRFSYIYYTNSSMNVSESV 193


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
 Frame = +3

Query: 264  EEQIVEK-IKTCIETKLLGCSSTRVLYTQARLPGAAQPRDVADKPTDAAKTSAAHMVRVN 440
            EE+I EK I   +E +     ++ VL  +A   G+A+P+DVADK   ++     H V   
Sbjct: 729  EEEIKEKDIAEQLEEENKISEASEVLVERASEIGSAKPKDVADK---SSSNVEIHTVPQT 785

Query: 441  PN-VQKIDKFFELEPNKTKQPTGDNASDVVNDVDQQQKIPSEQDLNNSIVKEPAEDNKV 614
             N V   +  ++ +  + K+   +   +    VD  + +P  +D      K  A DNK+
Sbjct: 786  TNFVTPEETSWQSKALEGKEEPEEKVEE-QKVVDMNEDVPVMEDKLEEAAK-VANDNKI 842


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 450  QKIDKFFELEPNKTKQPTGDNASDVVNDVDQQQKIP-SEQDLNNSIVKEPAEDNKVQEK 623
            QK+++  E + N  K+      ++   DVDQ ++ P SE+ LN++I  + +E  + + +
Sbjct: 1111 QKLEQNQEKQGNGNKKTDNKGNNEAEMDVDQHKEDPCSEEKLNSTIQVQTSEPTEAKNE 1169


>SB_11765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 492 KQPTGDNASDVVNDVDQQQKIPSEQ-DLNNSIVKEPAEDNKVQEK 623
           K+   DN      DVD    I  E+ D NN I KE  +DN   +K
Sbjct: 55  KEDVDDNTDIDKEDVDDNNDIDKEEVDDNNDIDKEDVDDNNDIDK 99


>SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/79 (26%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
 Frame = +3

Query: 345 QARLPGAAQPRD-VADKPTDAAKTSAAHMVRVNPNVQKIDKFFELEPNKTKQPTGDNASD 521
           Q   P   QP D    +P D             PN     +  +    +  QPTG   +D
Sbjct: 68  QPNQPTGQQPTDPTGQQPNDPTGQQPTDPTGQQPNQPTGQQPTDTTDQQPNQPTGQQPTD 127

Query: 522 VVNDVDQQQKIPSEQDLNN 578
                DQQ   P  Q  NN
Sbjct: 128 TT---DQQDNEPESQQPNN 143


>SB_8287| Best HMM Match : UVR (HMM E-Value=0.07)
          Length = 187

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 567 DLNNSIVKEPAEDNKVQEKWKQYTEAGQANITYVDPKDS 683
           +L + + K+ +E   ++E++K+Y E  ++ I  +DPK +
Sbjct: 73  ELQSMLSKKESEMKAMEERYKRYLEKAKSVIKTLDPKQN 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,578
Number of Sequences: 59808
Number of extensions: 384967
Number of successful extensions: 1317
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)