Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C05
(878 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 45 7e-05
SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0) 44 1e-04
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_38405| Best HMM Match : BACK (HMM E-Value=0) 40 0.004
SB_18403| Best HMM Match : BACK (HMM E-Value=0) 40 0.004
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0) 35 0.004
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 39 0.005
SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0) 39 0.006
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45) 31 0.93
SB_25538| Best HMM Match : Kinesin (HMM E-Value=0) 29 3.7
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 3.7
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 8.7
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44) 28 8.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 8.7
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 45.2 bits (102), Expect = 7e-05
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 2/170 (1%)
Frame = +2
Query: 293 PARALSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXX 472
P + L +L ALR+ + D V+ G + + SPY
Sbjct: 42 PKQTLDSLEALRQCEELCDVVIKVGSSTIHAHRVVLAACSPYFRAMFTREMAESRQAEIT 101
Query: 473 XXXYRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKR 652
+ DVD A+ L+ +AYT + +++T E ++ + L ++
Sbjct: 102 -----IRDVDESAMNLLITFAYTASITIEETNVQTLLPAACLLQLTE-IQEICCEFLKRQ 155
Query: 653 LAPADCLEVRSLXDL-SPHHLAQLDAYIAQH-FEXVCXTGAMAALPVVRI 796
L P++CL +R+ D S L ++ QH F+ V + LP ++
Sbjct: 156 LDPSNCLGIRAFADTHSCRDLLRVADLFTQHNFQEVMESEEFLLLPFAQL 205
>SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 651
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/137 (24%), Positives = 50/137 (36%)
Frame = +2
Query: 284 PDAPARALSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXX 463
PD P + S+LN LR + D LV + SPY L
Sbjct: 12 PDFPTKVFSSLNELRSEEKLCDVTLVVKDRSLVSHRVVLAGWSPYFHAMLTGDMLESRLE 71
Query: 464 XXXXXXYRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRL 643
+ ++ AL EL+ + YTGR + + +V+ + L
Sbjct: 72 KVT-----IHGIECAALEELINFCYTGRTEI-HVENVQSLMCASSLLQLSNVKQACVEFL 125
Query: 644 LKRLAPADCLEVRSLXD 694
+ L PA+CL +RS D
Sbjct: 126 HRALHPANCLGIRSFAD 142
>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 42.7 bits (96), Expect = 4e-04
Identities = 31/131 (23%), Positives = 51/131 (38%)
Frame = +2
Query: 302 ALSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXXXXX 481
A N R S++ D +L E+ SPY
Sbjct: 19 AFQQFNDFRNSKELCDVLLCVDDEEIPSHKLVLAASSPYFRAMFTSNLLECTQRTIT--- 75
Query: 482 YRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAP 661
+ D+D AL+++VEY YTG++ + D V+ VR ++ L K++
Sbjct: 76 --LYDIDVGALQQIVEYFYTGKITI-DEDNVQFLLHASCLLQVDRVRDFCSEFLAKQICV 132
Query: 662 ADCLEVRSLXD 694
+CL +R+L D
Sbjct: 133 TNCLGIRALTD 143
>SB_38405| Best HMM Match : BACK (HMM E-Value=0)
Length = 423
Score = 39.5 bits (88), Expect = 0.004
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
++ + DA+ LVE+AYT R++V + +ESV+ + L +L P++
Sbjct: 85 LQGLQPDAMELLVEFAYTARIQVSE-DNVQALLPAASLLQLESVKDACCEFLKNQLHPSN 143
Query: 668 CLEVRSLXDLSPHHLAQLD----AYIAQHFEXVCXTGAMAALPV 787
CL +RS D+ H L + QHF V T L V
Sbjct: 144 CLGIRSFADV--HVCTDLHESSYRFALQHFVEVSQTEEFMLLKV 185
>SB_18403| Best HMM Match : BACK (HMM E-Value=0)
Length = 423
Score = 39.5 bits (88), Expect = 0.004
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
++ + DA+ LVE+AYT R++V + +ESV+ + L +L P++
Sbjct: 85 LQGLQPDAMELLVEFAYTARIQVSE-DNVQALLPAASLLQLESVKDACCEFLKNQLHPSN 143
Query: 668 CLEVRSLXDLSPHHLAQLD----AYIAQHFEXVCXTGAMAALPV 787
CL +RS D+ H L + QHF V T L V
Sbjct: 144 CLGIRSFADV--HVCTDLHESSYRFALQHFVEVSQTEEFMLLKV 185
>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 628
Score = 34.7 bits (76), Expect(2) = 0.004
Identities = 21/107 (19%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
++++D A++ ++++ Y+G++ + + V+SV+ + L ++L+P +
Sbjct: 76 LQELDEKAMQNMIDFFYSGKIEISELNVQEVLPIACLLQ-VQSVQEACCEFLKRQLSPEN 134
Query: 668 CLEVRSLXDLSPHHLAQL----DAYIAQHFEXVCXTGAMAALPVVRI 796
CL + + D H +L DA+ HF V + +P+ ++
Sbjct: 135 CLGICAFAD--SHSCTELVKFSDAFARLHFVDVVQSEEFMDVPLKQL 179
Score = 23.8 bits (49), Expect(2) = 0.004
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 305 LSALNALRKSRQHYDAVLVAGG 370
L +LN+LR+ D VLV GG
Sbjct: 44 LCSLNSLRQQEDLCDMVLVVGG 65
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++P R A KRP VP GA+ + P+ EP P GE PT+
Sbjct: 994 PTKRPQVPVREAEPTKRPQVPVGGAEPTKRPQDPNGQAEPTKRPQAPVGEAEPTK 1048
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++P A KRP PN A+ + P EP P GE PT+
Sbjct: 1007 PTKRPQVPVGGAEPTKRPQDPNGQAEPTKRPQAPVGEAEPTKRPQAPVGEAEPTK 1061
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ + P KRP P G + + P+ EP P GE PT+
Sbjct: 942 PTKRPQSPVDGVEPTKRPQDPVGGVEPNKRPQDPNGQAEPTKRPQAPVGEAEPTK 996
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ L + P A KRP P GA + P EP P G PT+
Sbjct: 1059 PTKLPQAPVGEAKPTKRPQSPVGGAVPTKRPQAPVGEAEPTKRPQAPVGGAVPTK 1113
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++P R A KRP VP GA+ + P+ EP P GE PT+
Sbjct: 518 PTKRPQVPVREAEPTKRPQVPVGGAEPTKRPQDPNGQAEPTKRPQAPVGEAEPTK 572
Score = 32.3 bits (70), Expect = 0.53
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++P A KRP VP AK + P EP P GE PT+
Sbjct: 700 PTKRPQVPVGEAKPTKRPQVPVGEAKPTKRPKAPVGEAEPTKRPKAPVGEAKPTK 754
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++P A KRP PN A+ + P EP P GE PT+
Sbjct: 531 PTKRPQVPVGGAEPTKRPQDPNGQAEPTKRPQAPVGEAEPTKRPQAPVGEAEPTK 585
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ + P A KRP P AK + P EP P GE PT+
Sbjct: 726 PTKRPKAPVGEAEPTKRPKAPVGEAKPTKRPQVPVGEAEPTKRPQAPVGETEPTK 780
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ + P KRP P G + + P+ EP P GE PT+
Sbjct: 466 PTKRPQSPVDGVEPTKRPQDPVGGVEPNKRPQDPNGQAEPTKRPQAPVGEAEPTK 520
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ L + P A KRP P GA + P EP P G PT+
Sbjct: 583 PTKLPQAPVGEAKPTKRPQSPVGGAVPTKRPQAPVGEAEPTKRPQAPVGGAVPTK 637
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ + P A KRP VP AK + P +P P GE PT+
Sbjct: 687 PTKRPQSPVGEAEPTKRPQVPVGEAKPTKRPQVPVGEAKPTKRPKAPVGEAEPTK 741
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -1
Query: 776 LPSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAAS 597
+P+ + P A KRP V A+ + P+ EP P GE PT+ S
Sbjct: 634 VPTKRPQAPVGEAEPTKRPQVSVGEAEPTKRPQDPNGQAEPTKRPQVPVGEAEPTKRPQS 693
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ ++ A KRP PN A+ + P EP P GE PT+
Sbjct: 648 PTKRPQVSVGEAEPTKRPQDPNGQAEPTKRPQVPVGEAEPTKRPQSPVGEAEPTK 702
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTR 609
P+ + P A KRP VP A+ + P EP P G+ PT+
Sbjct: 739 PTKRPKAPVGEAKPTKRPQVPVGEAEPTKRPQAPVGETEPTKRPQDPVGQAEPTK 793
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/60 (26%), Positives = 23/60 (38%)
Frame = -1
Query: 773 PSLLXRIPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAASR 594
P+ ++P A KRP P + + P EP P G+ PT+ SR
Sbjct: 752 PTKRPQVPVGEAEPTKRPQAPVGETEPTKRPQDPVGQAEPTKRPQVPVGKAEPTKRPQSR 811
>SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 481
Score = 38.7 bits (86), Expect = 0.006
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 2/171 (1%)
Frame = +2
Query: 299 RALSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXXXX 478
+AL ++ LR +Q D L G ++ S Y +A+
Sbjct: 32 KALMVMDDLRGRKQLCDVTLCVGERQIVAHRLVLASFSSYF-QAMFTGGLVESFEDSVT- 89
Query: 479 XYRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLA 658
+ DVD+ A+ LV++AYTG++ + T + +++ ++ L ++L
Sbjct: 90 ---LRDVDSGAVELLVDFAYTGKLDI-TTENVQSIMYASSLFQLNAIQKACSEFLERQLH 145
Query: 659 PADCLEVRSLXDLSP--HHLAQLDAYIAQHFEXVCXTGAMAALPVVRIXLL 805
P++CL +RS D L + +I ++F V LP + +L
Sbjct: 146 PSNCLGIRSFADAHSCVGLLHASEKFINEYFSDVVKNEEFLLLPQEELAVL 196
>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 38.3 bits (85), Expect = 0.008
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 494 DVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPADCL 673
D+D A++ L+ Y+YT + ++ ++ V+ ++ + +L P++CL
Sbjct: 79 DMDPAAVQALISYSYTSEIEIR-VDNVENLLSVACILQIDEVKNACSEFMRHQLHPSNCL 137
Query: 674 EVRSLXD--LSPHHLAQLDAYIAQHFEXV 754
+RS D H L DA+ +HF V
Sbjct: 138 GIRSFADGHGCAHLLKAADAFTKEHFVEV 166
>SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 37.5 bits (83), Expect = 0.014
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
++D+ D ++ LVE+AYTGRV + V+ L +L P++
Sbjct: 55 MKDILPDYMQVLVEFAYTGRVEI-TVENVQNLLATASLLQFHEVKDLCCQFLESQLDPSN 113
Query: 668 CLEVRSLXDLSP--HHLAQLDAYIAQHFEXVCXTGAMAALP 784
CL +R + L +D Y+ ++F+ V + A LP
Sbjct: 114 CLGIRKFTESHGCCKFLEVIDKYVLENFKQVMKSEEYALLP 154
>SB_30927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 36.3 bits (80), Expect = 0.033
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 4/171 (2%)
Frame = +2
Query: 284 PDAPARALSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXX 463
P+ AL +N LRK R+ D +L GG E S YL
Sbjct: 10 PNHSNEALQMMNELRKKRELCDVLLHVGGREFRGHRIVLAGASSYL-----RAMFTNGML 64
Query: 464 XXXXXXYRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRL 643
+++ +D + L+++ YTG V + ++++ L
Sbjct: 65 ESGMRDIKLQGIDPAVMEILLDFVYTGIVDI-SVENVQALLSGATLLNLQTLSQACCSFL 123
Query: 644 LKRLAPADCLEVRSLXDLSPHHLAQLD----AYIAQHFEXVCXTGAMAALP 784
L ++CL +R+ DL + +L+ YI QHF V LP
Sbjct: 124 QTHLDASNCLGIRAFADL--YSCTELENAAFKYICQHFLDVIKCDEFLQLP 172
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/135 (21%), Positives = 47/135 (34%)
Frame = +2
Query: 305 LSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXXXXXY 484
L L L + R+ D +V G E+ S Y
Sbjct: 23 LETLRTLFQGRKMCDVTVVVGKMEIPSHRLILAANSSYFYSMFTSGMSETAQNRI----- 77
Query: 485 RVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPA 664
+++VDA +R+L+EY YT + + + V +D L K+L
Sbjct: 78 NLKEVDATVVRQLIEYCYTSTIEINENNVQNLLSIGNLLQFTTVVET-CSDFLKKQLHAT 136
Query: 665 DCLEVRSLXDLSPHH 709
+CL + + D HH
Sbjct: 137 NCLGIGNFAD---HH 148
>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
Length = 554
Score = 31.5 bits (68), Expect = 0.93
Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 1/150 (0%)
Frame = +2
Query: 281 DPDAPARALSALNALRKSRQHYDAVLVA-GGTEVXXXXXXXXXXSPYLLEALXXXXXXXX 457
D +AP A +NA R D VL+ G E+ S Y
Sbjct: 5 DAEAPCFAFKQMNAFRCDGIFCDVVLMTEDGQEIDAHKLVLSASSEYFRAMFLTDMKESQ 64
Query: 458 XXXXXXXXYRVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLAD 637
+ +D+ ++ LVE+AYT VR+ V +A +
Sbjct: 65 QKFIT-----IRAIDSQSMTTLVEFAYTSNVRINSENVETLLYAASMLQFVRVEKA-CYE 118
Query: 638 RLLKRLAPADCLEVRSLXDLSPHHLAQLDA 727
L K + +CL + +L +L H A+L A
Sbjct: 119 FLRKNINVPNCLTIWNLAEL--HGCAELTA 146
>SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 711
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 339 SIMTRFSSPEELRLPPTEQSSPLPRHT 419
S++ RF+ + LPPT +SPLPR T
Sbjct: 680 SLLLRFTPSYRVLLPPTAFNSPLPRLT 706
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 752 PXRNAAQYK-RPAVPNDGAKDRXETEPPDN-LPEPIASTNGPPGEP 621
P ++A+ +K PA P+ A +PP + P+P GPP +P
Sbjct: 418 PAKSASNHKCSPAKPSTPASKDAAAKPPTSPAPKPEDEATGPPNKP 463
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 674 PDNLPEPIASTNGPPGEP*PTR 609
P P PI+ T GPP P PTR
Sbjct: 349 PAMTPPPISPTTGPPKSPAPTR 370
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 725 RPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAASRRHDTISGP 570
RP P G E PP N P P + P P PTR S T GP
Sbjct: 249 RPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPP-PTRGPPSNSF-TTQGP 298
>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
Length = 906
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 385 PQSSPRRCLAIPTRSVITSP-RDHITSTGFRSCVPXXXXXXXXLEGTCGIRLHRSSSGQR 561
P+S+PR+C +PT I+ H + TG SC T I H S+ G
Sbjct: 132 PKSTPRKCDRLPTSFKISEAWLTHRSRTGRESCGASSHRTTPVGSYTVTIGGHTSTWGSP 191
Query: 562 YAL 570
Y L
Sbjct: 192 YLL 194
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 725 RPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAASRRHDTISGP 570
RP P G E PP N P P + P P PTR S T GP
Sbjct: 161 RPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPP-PTRGPPSNSF-TTQGP 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,705,027
Number of Sequences: 59808
Number of extensions: 514636
Number of successful extensions: 1547
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -