Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C02
(847 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 53 3e-07
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 50 3e-06
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 49 5e-06
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 48 7e-06
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 47 2e-05
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 47 2e-05
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 47 2e-05
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10) 45 7e-05
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 44 1e-04
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 42 8e-04
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06) 42 8e-04
SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022) 42 8e-04
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 42 8e-04
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 41 0.001
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 41 0.001
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 40 0.002
SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07) 39 0.006
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11) 36 0.041
SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22) 36 0.055
SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.39
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.49
SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2) 32 0.67
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 31 0.89
SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26) 31 1.2
SB_54188| Best HMM Match : Neur_chan_memb (HMM E-Value=2.8e-29) 31 1.6
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 31 1.6
SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32) 30 2.7
SB_18327| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2e-05) 30 2.7
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15) 29 3.6
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 3.6
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 4.7
SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10) 29 4.7
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 4.7
SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 6.3
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 8.3
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 52.8 bits (121), Expect = 3e-07
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAAATTAGD--YALRAR--VSNNGSVSWIKRLDISTPISM 474
G S + ++LW+PD+ L N A ++A Y +A+ VS+ G W+ ++T +
Sbjct: 133 GISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLNMWLAPTILTTSCKI 192
Query: 475 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVID--KRIYSMFESGAWD 606
+ +P D Q+CT KFGS +++ +D I ++G WD
Sbjct: 193 NVKYFPFDQQSCTLKFGSWTYDAGSVDIDTSPTASIKGYQQNGEWD 238
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALRARV------SNNGSVSWIKRLDISTPISMQLDN 486
V +W+PD++L N A+T +L ++ S++GS +W+ I T + +
Sbjct: 50 VEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVILSSDGSAAWLSPAIIKTECKVDVRL 109
Query: 487 WPNDMQTCTFKFGSRMHNSDEMDFVIDK 570
+P D+Q C KFGS H+ ++D + K
Sbjct: 110 FPFDVQYCDLKFGSWTHDGLKIDIQLRK 137
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATT---AGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPN 495
+ +W PD+ LLN T AG ++ V N G W + + SM L WP
Sbjct: 149 KEIWVPDISLLNNGDNTVKMAGGRSIFLTNVVVENTGKCVWSGPVTFTFTCSMALSRWPF 208
Query: 496 DMQTCTFKFGSRMHNSDEM 552
D QTC KFGS + S+ M
Sbjct: 209 DQQTCAMKFGSLSYGSNLM 227
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWIKRLDISTPISMQLDN 486
++ +R+W+PDV+L N A+T +L ++ N GS +W+ I + + +
Sbjct: 108 IAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWLAPAIIKSECKIDVRF 167
Query: 487 WPNDMQTCTFKFGSRMHNSDEMD 555
+P D+Q+C FGS H+ ++D
Sbjct: 168 FPFDVQSCELTFGSWTHDGLKID 190
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAG---DYALRARVSNNGSVSWIKRLDISTPISMQLDNWP 492
VS ++W PD+VL N A A+T G ++ R VS++G W+ + S+ ++++ +P
Sbjct: 60 VSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKNMWLAPVIFSSSCTIKIKYFP 119
Query: 493 NDMQTCTFKFGSRMHNSDEMDF---VIDKRIYSMFESGAWDV 609
D Q C+ KFGS + +D + +G WD+
Sbjct: 120 FDDQYCSLKFGSWTFDGFHLDLKPEAPQASLSKFIPNGEWDL 161
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAAATTAG--DYALRARVSNNGSVSWIKRLDISTPISMQL 480
G + S+ +W PD+ +LN+A + +R +++ G V W+ L + T M +
Sbjct: 61 GIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLWMNPLILHTSCGMDI 120
Query: 481 DNWPNDMQTCTFKFGSRMHNSDEMD---FVIDKRIYSMFESGAWDVTALSS 624
++P D Q C +FGS + MD F + E+G W + + +S
Sbjct: 121 AHFPFDNQACELRFGSWSTSLRYMDVHPFEDTANLQYFVENGEWILESTTS 171
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAAATTAGD----YALRARVSNNGSVSWIKRLDISTPISM 474
G T + ++ +W PD+VL ++A + Y +S +GS +W + +
Sbjct: 63 GVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIISKDGSSAWFSPASFRSTCKI 122
Query: 475 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDK---RIYSMFESGAWDVTALSSAVQSQ 639
+ +P D QTC KFGS + ++D + +S WD+ + +++ +SQ
Sbjct: 123 DVTYFPFDEQTCYMKFGSWTYTIADVDIQASPAPVKSSKYLKSAEWDLMSATTSRKSQ 180
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLN--AAATTAGDYAL--RARVSNNGSVSWIKRLDISTPISM 474
G ++ V+ +W+PD+VL + T Y RA + +NG W +I + ++
Sbjct: 82 GLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMHNGYTEWFAPTEIHSICAI 141
Query: 475 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--DKRIYSMF-ESGAWDVTAL 618
+ +P D Q C KFGS ++ +++ D S + +SG WD+ +
Sbjct: 142 DITYFPFDEQFCKMKFGSWSYSGRQLNLTSKGDSADLSKYTKSGEWDLLGM 192
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 46.0 bits (104), Expect = 4e-05
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAG--DYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPND 498
+++W+PD L N AG D +L RV NG+V++ R+ + M+ N+P D
Sbjct: 135 DKIWKPDTYLENVKKIDAGSDDKSLVHKGFRVYPNGNVTFSTRISATLSCKMEFRNFPMD 194
Query: 499 MQTCTFKFGSRMHNSDEMDFVI-DKRIYSMFESGAWDVTALSSAV 630
Q+C S DE+ ++ D RIY E +DV L V
Sbjct: 195 RQSCPVTISSYFFPEDEIYYIWGDLRIYK-GELAQFDVLGLKKDV 238
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 45.6 bits (103), Expect = 5e-05
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Frame = +1
Query: 295 QGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR----ARVSNNGSVSWIKRLDI 456
Q ++G +V ER +W PDVVLLN A ++ + V +NG V W+ + +
Sbjct: 52 QSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNEGNPVLVESNGVVRWLAPVVL 111
Query: 457 STPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF-VIDKRIYSMF-ESGAWDV 609
+ M + ++P D Q C KF S + E+ +D + + ES WD+
Sbjct: 112 KSRCKMDVRSYPFDEQYCGLKFASWTGSQSELRLDAMDNDVRQNYSESSEWDL 164
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 45.2 bits (102), Expect = 7e-05
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Frame = +1
Query: 337 RLWRPDVVLLNAA-ATTAGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 504
R+WRPD++L N A T G + + ++ +GS W+ + + + +P D Q
Sbjct: 103 RVWRPDLILYNNADRDTDGALDRFYTKVQLKFDGSSLWLAPIIFKSTCKFDVAYFPFDEQ 162
Query: 505 TCTFKFGSRMHNSDEMDFV----IDKRIYSMFESGAWDVTALSS 624
+C KFGS ++ ++ V D I +G W++T +S+
Sbjct: 163 SCILKFGSWTYDGLRLNIVPENGTDIGIDKFVSNGEWELTGVSA 206
>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
Length = 384
Score = 45.2 bits (102), Expect = 7e-05
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLL-NAAATTAG--DYA-LRARVSNNGSVSWIKRLDISTPISM 474
G ++ + +W+PD++L N G D+ R R++++G W + T ++
Sbjct: 16 GVKEVVLQARDVWQPDIILYQNIIQDFDGRLDHTNTRVRITSSGMTYWSMPFVVVTLCTI 75
Query: 475 QLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKR 573
+ ++P D Q C FGS H+ +E++ + D++
Sbjct: 76 NVSDFPFDTQQCKLTFGSWQHDGNEINLINDRK 108
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAA-ATTAGD---YALRARVSNNGSVSWIKRLDISTPISM 474
G + V +W PD+VL N + ++G+ + + + ++G+V W+ + + + +
Sbjct: 233 GMKSIKVDPSCVWVPDIVLYNNVDSDSSGEMYKFTTKVNIHSDGTVQWLSPIQVKSECKI 292
Query: 475 QLDNWPNDMQTCTFKFGSRMHNSDE 549
+ N+P D Q C +FGS ++ E
Sbjct: 293 DITNFPLDEQFCKLEFGSWAYDGFE 317
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 340 LWRPDVVLLNAAAT----TAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 507
LW+PD+ L N A + + + + +V+ +G+ +W+ +T + + +P D Q
Sbjct: 73 LWKPDIYLYNNADSGYDGSLYGFTAKIKVNYSGTNTWLAPKIFTTSCKINVKYFPFDQQE 132
Query: 508 CTFKFGSRMHNSDEMDFVIDK---RIYSMFESGAWD 606
C KFGS ++++ +D ++ I ++G WD
Sbjct: 133 CRLKFGSWTYDANSVDIFPEEDQASIKGYQKNGEWD 168
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 41.5 bits (93), Expect = 8e-04
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Frame = +1
Query: 328 SSERLWRPDVVLLNAA---ATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNW 489
S + +W PDV L+N AG L V +G V WI + ++ ++++ W
Sbjct: 424 SPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGKVDWIAQASFTSTCNLRVRFW 483
Query: 490 PNDMQTCTFKFGSRMHNSDEMDFVIDKR--IYSMFESGAWDV 609
P D Q CT F S + E+ +D + WD+
Sbjct: 484 PMDDQFCTLTFSSWTYTESEIALKMDNSGLTTGHLSNNEWDI 525
>SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 319
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 412 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF--VIDKRIYS- 582
V+N G V W + S+++ WP D+Q C+ FGS + + ++ + D Y+
Sbjct: 21 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGSFIFPASALNVTSLYDSSFYTD 80
Query: 583 -MFESGAWDVTALS 621
+SG WD+ +S
Sbjct: 81 RFMQSGDWDIKEVS 94
>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
Length = 147
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +1
Query: 328 SSERLWRPDVVLLNAAATT---AGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNW 489
S + +W PDV L+N A + AG + V G V W+ ++ +++ W
Sbjct: 23 SPQEIWVPDVALINNADKSVRLAGGPELFKTDLNVWQGGKVEWVAPASFTSDCKLRVRYW 82
Query: 490 PNDMQTCTFKFGSRMHNSDEMDFVID--KRIYSMFESGAWDVTALSS 624
P D Q CT F S ++ E+ D + + WD+ +++
Sbjct: 83 PIDDQFCTLTFSSWTYDDQEIIIETDDSELTRDHLHNSQWDIINITA 129
>SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022)
Length = 91
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 513
+++W+PD + N ++T + + G V + +R+ + M L N+P D Q+C+
Sbjct: 26 KQIWKPDTYINNEKSSTVPENQFLLTIDPEGRVVYSQRMTVVASCMMYLRNYPMDTQSCS 85
Query: 514 FKFGS 528
F S
Sbjct: 86 ISFES 90
>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 400
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 412 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF--VIDKRIYS- 582
V+N G V W + S+++ WP D+Q C+ FGS + + ++ + D Y+
Sbjct: 102 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCSMTFGSFIFPASALNVTSLYDSSFYTD 161
Query: 583 -MFESGAWDVTALS 621
+SG WD+ +S
Sbjct: 162 RFMQSGDWDIKEVS 175
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Frame = +1
Query: 307 GCSTWLVSSERLWRPDVVLLNAA----ATTAGD--------YALRARVSNNGSVSWIKRL 450
G S VS +R W PD++L N+ + D Y + + +NG SW+
Sbjct: 39 GVSQIYVSPKRPWTPDILLYNSVRFVDSAEEDDRLGGGTEKYKTQIEIRSNGYNSWLSPA 98
Query: 451 DISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 567
+ + +P D Q CT +FGS ++ ++D ID
Sbjct: 99 MFKSTCDVNTRYFPFDDQHCTLEFGSWAFDASQLDLQID 137
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Frame = +1
Query: 337 RLWRPDVVLLNAAATT-AGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 504
++W PD++L N A T AG Y S++G+ W ++ ++ + +P D Q
Sbjct: 153 KVWIPDIILYNNADETYAGGLEKYKTSVIASSDGTQEWNSPASFTSTCNINVRYFPFDSQ 212
Query: 505 TCTFKFGSRMH--NSDEMDFVIDKRIYSMF-ESGAWDVTAL 618
C+ KFGS + N M D S + +G W + A+
Sbjct: 213 NCSLKFGSWTYVGNRLTMTSTSDSADLSKYVNNGEWHLLAM 253
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Frame = +1
Query: 340 LWRPDVVLLNAA--ATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 507
LW+PD+VL N Y +V + G + W + T + + +P D QT
Sbjct: 116 LWKPDMVLYNNVNDEDRGEQYLFNTKVIIYSTGDIEWYSPNILKTHCKIDIQYFPFDTQT 175
Query: 508 CTFKFGSRMHNSDEMDF-----VIDKRIYSMFESGAWDVTA 615
C FGS +N ++D + I + ++G W++ +
Sbjct: 176 CKLTFGSWTYNGLKIDVTFFRGIAGADISTYSQNGEWELVS 216
>SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)
Length = 134
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 394 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID-- 567
+ + +VS+ G W+ ++T + + +P D Q+CT KFGS +++ +D
Sbjct: 13 FKAKIKVSHTGLNMWLAPTILTTSCKINVKYFPFDQQSCTLKFGSWTYDAGSVDIDTSPT 72
Query: 568 KRIYSMFESGAWD 606
I ++G WD
Sbjct: 73 ASIKGYQQNGEWD 85
>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 337 RLWRPDVVLLNA--AATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQ 504
++WRPD NA ++ TA D + + ++ NG V + + I+ M+L ++P D Q
Sbjct: 34 KMWRPDPFCYNARESSLTASDDDINSMMTIHPNGDVVYSRMTIITAECEMKLHDFPMDEQ 93
Query: 505 TCTFKFGSRMHNS 543
C K GS +++
Sbjct: 94 QCHLKLGSYSYST 106
>SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 36.3 bits (80), Expect = 0.031
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 421 NGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDK---RIYSMFE 591
NG W+ + +++ + + +P D Q C+ KFGS ++ + +D V + +
Sbjct: 22 NGINIWLAPVLLTSSCKIDVTYFPFDEQHCSLKFGSWTYDGERLDLVSESPSGDVSKYVP 81
Query: 592 SGAWDVTALSS 624
SG WD+ + ++
Sbjct: 82 SGQWDLVSFTA 92
>SB_55106| Best HMM Match : Neur_chan_memb (HMM E-Value=4.5e-11)
Length = 269
Score = 35.9 bits (79), Expect = 0.041
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 403 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV-----ID 567
+A V +NG W +I + + + +P D Q C KFGS + +++F D
Sbjct: 21 KATVKHNGYTEWFAPTEIHSICKIDITFFPFDEQFCKLKFGSWTYTGRQLNFTNKRNSAD 80
Query: 568 KRIYSMFESGAWDVTA 615
+Y++ SG W + A
Sbjct: 81 LTMYTI--SGEWALVA 94
>SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)
Length = 636
Score = 35.5 bits (78), Expect = 0.055
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 328 SSERLWRPDVVLLNAAATTA----GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 495
++ W+PD NA + D R + +G + + + + I M L ++P
Sbjct: 292 AASNAWKPDPYCYNARQSNMMLEDKDVNSRLSIDPDGKIFYSRGVSIVASCEMDLHDFPL 351
Query: 496 DMQTCTFKFGSRMHNSDEMDF 558
D Q C KFGS ++ F
Sbjct: 352 DTQNCYLKFGSYAFTDTDIFF 372
>SB_37285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 35.1 bits (77), Expect = 0.072
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 367 NAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSD 546
N A T + + ++ N+G W I + ++ + +P D Q C KFGS +N
Sbjct: 5 NVPAGTLYQFKTKVQLFNDGLCVWYAPTIIQSGCNIDITYFPFDDQLCELKFGSWTYNGL 64
Query: 547 EMDFV 561
E++ V
Sbjct: 65 EVNIV 69
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 340 LWRPDVVLLNAAA----TTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 507
+W P V++ N A + R V ++G+V W+ I + + + +P D Q
Sbjct: 576 IWTPPVIIYNQAGDLGESITSSNTPRPVVRSDGTVLWMVPTVIKSSCVIDVKYFPFDQQL 635
Query: 508 CTFKFGSRMHNSDEMD 555
C FGS ++ ++D
Sbjct: 636 CKIIFGSWHYDVSKLD 651
>SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 340 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 507
LW PD NA + + D + + ++ +GS+ + + I M L ++P D QT
Sbjct: 17 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 76
Query: 508 CTFKFGSRMHNSDEM 552
C FGS + +++
Sbjct: 77 CNLVFGSYGYTDNDI 91
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +1
Query: 340 LWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFK 519
+W PD NA + + NG + + R + M L N+P D+Q C+
Sbjct: 151 IWLPDTYFNNANEYEVYIVNQLSLIKPNGDIYYSGRNKVKGACQMDLFNFPLDVQRCSLV 210
Query: 520 FGSRMHNSDEMDF 558
S + ++DF
Sbjct: 211 LESFAYTGRQIDF 223
>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 340 LWRPDVVLLNAAATT--AGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 507
LW PD NA + + D + + ++ +GS+ + + I M L ++P D QT
Sbjct: 144 LWFPDTYCSNAKRSDLMSPDTEIHSSLTLEPDGSIFYSRSAHIVASCEMDLRDFPMDTQT 203
Query: 508 CTFKFGSRMHNSDEM 552
C FGS + +++
Sbjct: 204 CNLVFGSYGYTDNDI 218
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.7 bits (61), Expect(2) = 0.49
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 487 WPNDMQTCTFKFGSRMHNSDEMDFVI-----DKRIYSMFESGAWDVTAL 618
+P D Q C KFGS H+S +D +K IY+ E G W + +
Sbjct: 1509 FPFDEQKCLLKFGSWTHDSSRLDMRTQTNGSNKDIYT--EHGEWQLVGV 1555
Score = 22.2 bits (45), Expect(2) = 0.49
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 325 VSSERLWRPDVVLLN 369
V+ E +W PD+V+ N
Sbjct: 1492 VAPEEVWVPDIVIYN 1506
>SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2)
Length = 75
Score = 31.9 bits (69), Expect = 0.67
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 412 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 555
+ + G + W + T + + +P D QTC FGS +N ++D
Sbjct: 19 IYSTGDIEWYSPNILKTHCKIDIQYFPFDTQTCKLTFGSWTYNGLKID 66
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 418 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 555
+NG+ W + + +++ +P D QTC KFGS H+ +D
Sbjct: 207 SNGTNKWRSPALLKSICKIKVKFFPFDSQTCKLKFGSFSHDITTLD 252
>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
Length = 360
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 454 ISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKR 573
+ T ++ + ++P D Q C FGS H+ +E++ + D++
Sbjct: 5 VVTLCTINVSDFPFDTQQCKLTFGSWQHDGNEINLINDRK 44
>SB_54188| Best HMM Match : Neur_chan_memb (HMM E-Value=2.8e-29)
Length = 355
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 460 TPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSM----FESGAWDV 609
T + + ++P D Q C FG+ ++ +E++ + +KR+ ++ E+G W V
Sbjct: 7 TMCKIDVTDFPFDSQRCPITFGAWQYDQNEVNLINNKRLATVASTRVENGEWTV 60
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 409 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFK 519
R+ NG++ + RL +++ M L N+P D Q C K
Sbjct: 64 RIFPNGTLLYSMRLKVTSQCPMDLRNFPMDSQKCRLK 100
>SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32)
Length = 363
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 412 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFE 591
+ ++G+ SW +I + + + +P D Q+C FGS + + ++ V + + +
Sbjct: 10 IDSDGTNSWYAPTEIKSICQIDITYFPFDAQSCPIIFGSWTYTGNYLNLVNARNQSDLSK 69
Query: 592 ---SGAWDV 609
SG W++
Sbjct: 70 YTISGEWEL 78
>SB_18327| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2e-05)
Length = 109
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 418 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKR---IYSMF 588
N G++ W + + + + +P D Q C+ FGS + S+ + I ++ +
Sbjct: 12 NTGAIEWYAPTLVKSICKIDITYFPFDKQNCSLVFGSWTYTSEFLSLDIKQKEPDLSKYT 71
Query: 589 ESGAWDV 609
+G W++
Sbjct: 72 PNGQWEM 78
>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
Length = 296
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 504
+ +W P NA D + NG V + RL I+ + L +P+D+Q
Sbjct: 32 DEIWIPSTYFFNAKKAYFHDVTTENYLLMIKPNGDVFYSVRLTITMACKLTLQMFPHDVQ 91
Query: 505 TC 510
C
Sbjct: 92 VC 93
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 239 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 156
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 239 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 156
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 316 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 426
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
Length = 517
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 340 LWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 510
+W PD V ++A+ + + + V+ G V W R + M L +P D QTC
Sbjct: 38 VWVPDTVFVDASHAYMHNVMVANHKLDVTPGGRVFWGTRATLIARCHMNLRRYPMDEQTC 97
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 667 PREXPPRHGPGSAPHWTEPSH 605
PR PRH G PHW +P H
Sbjct: 906 PRYGAPRH-MGPPPHWVQPGH 925
>SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 657 FHLATVLALHRTGQSRHIPRS*LEHTVYSFVNHEIHFVTIVHPRTELERASLHVVGP 487
FH + L G++ +P EH ++F NH F ++ R L+R V GP
Sbjct: 77 FHDVVIPGLGDLGEAATLPTRFKEHAAHAFDNHS--FNVMLSDRISLDRRLKDVRGP 131
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +2
Query: 98 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 277
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 278 TTELE 292
+ + E
Sbjct: 484 SRDSE 488
>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 736 PNXAPAASGXXRGXV-SGNTXGTLPREXPPRHGPGSAPHWTEPSHPTLL 593
P A SG V + + T P PRHGP + P++ SH LL
Sbjct: 327 PGETSATSGSETSQVRTSSPKTTFPGINWPRHGPQAFPNFPVSSHSGLL 375
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 224 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 120
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -1
Query: 742 PXPNXAPAASGXXRGXVSGNTXGTLPREXPPRHGPGSAPHWTE 614
P P P G G + T G P+ PP H P H+ +
Sbjct: 780 PSPQGDPNQGGQQPGYGAPPTQGGPPQAQPPPHAPPGQAHYQQ 822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,776,386
Number of Sequences: 59808
Number of extensions: 536310
Number of successful extensions: 1496
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -