Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B17
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)            151   1e-36
SB_56237| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                36   0.044
SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)            36   0.058
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                33   0.24 
SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_33674| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           30   2.2  
SB_6785| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score =  151 bits (365), Expect = 1e-36
 Identities = 87/196 (44%), Positives = 111/196 (56%), Gaps = 9/196 (4%)
 Frame = +3

Query: 180 YKQVFVXXXXXXXXXXXXISILSTHLLHSIAIIDQTYISRKAMAQAVAEQFFGCFITMQN 359
           YKQVFV            +SI +T LLHS  IIDQT+I+R+ +AQA+AEQFFGC+I MQ+
Sbjct: 186 YKQVFVDQAYSVKAAYASMSIFNTSLLHSSRIIDQTFITRRVLAQALAEQFFGCYICMQD 245

Query: 360 WSDLWLAKGIPDYLCGLYSKKCFGNNAYRYWIHQELKEVMGYEEQ-------YGGIVLDP 518
           WSD WL  GI  YL  LY KK FGNN YRYWI +E + V  YE         +  ++   
Sbjct: 246 WSDAWLCSGIAGYLYSLYVKKAFGNNEYRYWIMKETESVCQYETDGPGLPPLHSNMIEST 305

Query: 519 WQPPASGTRIEPNVFYFPVRNV--HTMSPRYIEVMRKKSHLVLRMLEQRIGQELLLQVFN 692
               +S ++  P        ++  H  S +  EV   KSHLVLRM+E RIGQE LLQ+F+
Sbjct: 306 ANQSSSSSQHSPRSAAGSSIHLHPHLTSVKQREVAWSKSHLVLRMIEIRIGQEPLLQLFS 365

Query: 693 KQLALXTNAANTRSGV 740
                 TN     SG+
Sbjct: 366 -----LTNITRCHSGI 376



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = +2

Query: 32  KLMFDPFMNEVTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYPYPXLQTSF 193
           ++  DP M EVT++CLP LL  LK++  +LH+ FE YEE LS RYPY   +  F
Sbjct: 137 EIYVDPIMPEVTNFCLPGLLANLKHSTAFLHDVFEMYEENLSCRYPYTHYKQVF 190


>SB_56237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 48/116 (41%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
 Frame = +3

Query: 363 SDLWLAKGIPDYLCGLYSKKCFGNNAYRYWIHQELKEVMGYEEQ-------YGGIVLDPW 521
           SD WL  GI  YL  LY KK FGNN YRYWI +E + V  YE         +  ++    
Sbjct: 2   SDAWLCSGIAGYLYSLYVKKAFGNNEYRYWIMKETESVCQYETDGPGLPPLHSNMIESTA 61

Query: 522 QPPASGTRIEPNVFYFPVRNV--HTMSPRYIEVMRKKSHLVLRMLEQRIGQELLLQ 683
              +S ++  P        ++  H  S +  EV   KSHLVLRM+E RIGQE LLQ
Sbjct: 62  NQSSSSSQDSPRSAAGSSIHLHPHLTSVKQREVAWSKSHLVLRMIEIRIGQEPLLQ 117


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 306 MAQAVAEQFFGCFITMQNWSDLWLAKGIPDYL 401
           +A  +A Q+FG  +TM+ W+DLWL +G   ++
Sbjct: 613 VAHELAHQWFGNLVTMKWWNDLWLNEGFASFV 644


>SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)
          Length = 287

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 276 IDQTYISRKAMAQAVAEQFFGCFITMQNWSDLWLAKGIPDYL 401
           + + Y+  + ++  +A Q+FG  +TM  W DLWL +G   Y+
Sbjct: 68  VHKQYVG-ELVSHELAHQWFGNLVTMTWWDDLWLNEGFASYV 108


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 318 VAEQFFGCFITMQNWSDLWLAKGIPDY 398
           +A  +FG  +TM  W DLWL +   DY
Sbjct: 308 IAHMWFGNLVTMSWWDDLWLNEAFADY 334


>SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 306 MAQAVAEQFFGCFITMQNWSDLWLAKGIPDY 398
           +A  +  Q+FG  +T++ W+D+WL +G   +
Sbjct: 45  IAHELVHQWFGNIVTLKWWNDMWLNEGFAKF 75


>SB_33674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 627 SHLVLRMLEQRIGQELLLQVFNKQLALXTNAANTRSGVGYXGPCCYRPLVGQAXSXXLV 803
           +HL   +    IG +  L++F       T+ +      GY   CCY PL G+  +  +V
Sbjct: 85  THLPATVQLCSIGGDKQLRIFTTSGKADTSVSVMTGHTGYINACCYEPLRGEQIASLMV 143


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 297  RKAMAQAVAEQFFGCFITMQNWSDLWLAKGIPDYL 401
            R  +A  ++  +FG  I  ++W++ WL++G   Y+
Sbjct: 1535 RVRVAHEISHAWFGLLIGAKDWTEEWLSEGFSTYI 1569


>SB_6785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 660 IGQELLLQVFNKQLALXTNAANTRSGVGYXGPCCYRPLVGQ 782
           IG +  L++F       T+ +      GY   CCY PL G+
Sbjct: 5   IGGDKQLRIFTTSGKADTSVSVMTGHTGYINACCYEPLRGE 45


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +1

Query: 571 PYAMFIPCRRGILKLCAKNLIWYYECWSSVLDKSSC 678
           PY   +   +G+ + C ++ +W Y+C ++   +  C
Sbjct: 240 PYGQSVSNIQGLYRACHRDRVWKYQCTNNPATRGRC 275


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +3

Query: 576 RNVHTMSPRYIEVMRKKSHLVLRMLEQRIGQELLLQVFNK 695
           + ++++ P+ IE+ RKK   +  ++EQ + Q+ + ++ N+
Sbjct: 599 KRMNSLRPKIIELQRKKQQYMEVLMEQGVTQDEVQEIVNE 638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,294,953
Number of Sequences: 59808
Number of extensions: 624629
Number of successful extensions: 1299
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)