Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B06
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 44 1e-04
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 43 3e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 42 4e-04
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 41 0.001
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 39 0.005
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 39 0.005
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 38 0.007
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 37 0.017
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 37 0.022
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.039
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 33 0.27
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.27
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.63
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.5
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.5
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 1.9
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 1.9
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 29 3.4
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 3.4
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 3.4
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 5.9
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 5.9
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Frame = +1
Query: 142 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 306
++ LL Y +D+ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 307 WNAGEWG-CSTWLVSSERLWRPDVVLLNAXAT 399
WN ++G + ++ +R+W+PDV+L N +T
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRAST 126
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 142 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 306
+++ L Y +D+ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 307 WNAGEW-GCSTWLVSSERLWRPDVVLLN 387
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +1
Query: 154 LLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 318
L TY++D P D + V L L L ++ + T+ + ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 319 EW-GCSTWLVSSERLWRPDVVLLN 387
+ G ++ + RLW PD+ L N
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYN 103
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 280 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
+ W++ LSWNA E+G +T V +RLW PD+VL N
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYN 113
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 387
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 253 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 387
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 390
+ + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 217 HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 390
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 391 XATTGGDYALRAVFLITGPSPGXSAWTLXSNFYAXXN 501
T G +I S G W ++F + N
Sbjct: 166 DETYAGGLEKYKTSVIAS-SDGTQEWNSPASFTSTCN 201
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 208 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 384
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 385 NA 390
N+
Sbjct: 81 NS 82
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.1 bits (82), Expect = 0.017
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 118 ENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIR---ESESTVRIQADLQM 282
++ L L+ D Y+++ P D + V + + + + E + + ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 283 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 36.7 bits (81), Expect = 0.022
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 241 ESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAXATTGGD- 411
E +++ ++ W + LSWNA E+ G S + ++LW+PD+ L NA ++ G
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSL 163
Query: 412 YALRAVFLITGPSPGXSAW 468
Y +A ++ G + W
Sbjct: 164 YGFKAKIKVS--HTGLNMW 180
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 35.9 bits (79), Expect = 0.039
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAXATTGGDYALRAVFLITGPS 450
+ + W D RL WN ++G +++ S +LW PD+ L N A + + +T S
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYN-NANDNYEKEKEEYYGLTVNS 334
Query: 451 PGXSAW 468
G W
Sbjct: 335 DGSIGW 340
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 235 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAXATTG 405
+ E L+M W D L WN ++G T + + + +W P V++ N G
Sbjct: 534 VEEKNMVFTTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLG 591
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 193 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRP 369
K +V LH + A + S S VR+ +++ W + L WN ++ G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 370 DVVLLN 387
D+VL N
Sbjct: 127 DIVLYN 132
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 226 HANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 387
H + + TV L W D L+WN ++ G + V +W PD+VL N
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYN 253
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAXAT 399
+++ W D L+WN ++G + V +W+PD++L N +T
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPAST 68
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAXAT--TGGDYALRAVFLITG 444
+ + W ++ L+W+ + G T + ++ +W PD+VL ++ + +GG + +I+
Sbjct: 45 VNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIIS- 103
Query: 445 PSPGXSAWTLXSNF 486
G SAW ++F
Sbjct: 104 -KDGSSAWFSPASF 116
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
V + + + W + L+W+ +G T + V R+WRPD++L N
Sbjct: 69 VSLHQIIDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYN 113
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 274 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAXATTGGDYAL 420
+ + W + ++WN E+G + + LW+PD+ L N A +G D +L
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYN-NADSGYDGSL 92
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 49 MSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRH 228
M+ + LLPFL S E+ +++ L Y++++ P V+N + +
Sbjct: 1 MAPLLLSLLPFLFVFPSLSVDHTEDVEHR--LLNDLFKDYNKEARP----VLNKSEAI-- 52
Query: 229 ANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 381
E + + + + W++ L+W+ +G T + V+ +W+PD+VL
Sbjct: 53 ----EVQFDMAYAQLINLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 286 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 381
W + L+WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 277 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 286 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 387
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 286 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAXATTGGDYALRAVFLITGPSPGX 459
W + L WN +G + VS ++W PD+VL NA A+T G +I S G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVS-SDGK 98
Query: 460 SAW 468
+ W
Sbjct: 99 NMW 101
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 286 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 387
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 223 RHANIRESEST-VRIQADLQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 387
R+++ ++S++ + + W D L WN G V +W PD+ L+N
Sbjct: 10 RYSSCQDSKAQELTTNLRIYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 258 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 175
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 258 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 175
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 117 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 296
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 297 TTELE 311
+ + E
Sbjct: 484 SRDSE 488
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +1
Query: 166 YDRDSPP--DSKIVVNLTLHLRHANI-RESESTVRIQADLQM--NWIDKRLSWNAGEWGC 330
YD+ P D+ V L + + N R E + + L M NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 331 STWLVSSERLWRPDVVLLNAXATTGGD 411
+ E++WRPD NA A + D
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHAYSDVD 99
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +1
Query: 166 YDRDSPP--DSKIVVNLTLHLRHANI-RESESTVRIQADLQM--NWIDKRLSWNAGEWGC 330
YD+ P D+ V L + + N R E + + L M NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 331 STWLVSSERLWRPDVVLLNAXATTGGD 411
+ E++WRPD NA A + D
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHAYSDVD 99
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 259 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 387
+++ + + W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1463 KLKQIVDLQWENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 243 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 139
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,287
Number of Sequences: 59808
Number of extensions: 327053
Number of successful extensions: 1038
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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