Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B11_e82_03.seq
         (1544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  

>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 45  WHXPGX--AGNSARGTKVXTILLKLSNRYVMQKYF 143
           W  PG    GNS R TK+  +LLKL   + +QKYF
Sbjct: 481 WKMPGRYLTGNSYRKTKIACVLLKL---FCLQKYF 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,060,228
Number of Sequences: 59808
Number of extensions: 408595
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)