Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.016
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             33   0.78 
SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)                    31   2.4  
SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)                  30   4.1  
SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 29   9.6  
SB_16415| Best HMM Match : RVT_1 (HMM E-Value=0.00052)                 29   9.6  
SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)                29   9.6  
SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)                 29   9.6  
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)                   29   9.6  
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)                 29   9.6  
SB_11094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   9.6  
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)                   29   9.6  

>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 38.3 bits (85), Expect = 0.016
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 12   QNHTSXIKSTDXVDCIEEXXAPLADINEESSDNIYAIIEESPIRHSKP-LPGVPSTVKIT 188
            QN T     +  + C++    P  D+  ES ++ Y     +P   SK  LPG      + 
Sbjct: 777  QNETFECDGSGVIVCLKNWFGPRCDVFCESDNSRYVC---APGNGSKMCLPGWTGANCLN 833

Query: 189  PQSPPEGYNTPKPIPSNSASNESMGLL 269
            P  PP     P P PS+  +N S  LL
Sbjct: 834  PVIPPSTIMLPSPSPSSRGTNNSFALL 860


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
 Frame = +3

Query: 132 SPIRHSKP--LPGVPSTVKIT-----PQSPP-EGYNTPKP 227
           SPI ++KP  LPG+P T  IT     P  PP +GYN P P
Sbjct: 877 SPIINTKPAVLPGLPGTPPITSPSSLPPPPPLQGYNPPPP 916


>SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)
          Length = 1105

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 138 IRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESM 260
           +RH +  P  PSTV +   + PE Y +    PS SA+ +SM
Sbjct: 312 VRHQQQTPTKPSTVSLHADNRPEKYKSTIK-PSTSATMQSM 351


>SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)
          Length = 471

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 144 HSKP--LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           H +P  + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 112 HQQPPLMDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 154


>SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 99  SSDNIYAIIEESPIRH-SKPLPGVPSTVKITPQ-SPPEGYNTP-KPIPSNSASNESMGL 266
           S++N+ A++++  I H SK  P +P+T++  P  S    Y    +P+P      E  GL
Sbjct: 732 STNNMGALVQQRLIEHHSKNYPRLPATIRFDPDPSVAHRYRKQGRPVPVQGKGVEIRGL 790


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 87   INEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSAS 248
            I   SS   Y  I+ SP   + P+   PST   TP  P    N  KP PS +++
Sbjct: 1243 IGSPSSLISYKPIKPSP--STTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTST 1294


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPS 236
           +P R++ P    PS    TP S P  YNTP P PS
Sbjct: 636 TPSRYNTPW-STPSRYN-TPWSTPSRYNTPWPTPS 668


>SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 581 MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 617


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 153 PLPGVPSTVKITP-QSPPEGYNTPKPIPSNSASNESM 260
           PLP  PS V   P Q+ P    +P+P PSNS +   M
Sbjct: 250 PLPRTPSGVSEKPVQAIPLDRASPRPTPSNSPAPPGM 286


>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 955

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 277 MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 313


>SB_16415| Best HMM Match : RVT_1 (HMM E-Value=0.00052)
          Length = 316

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 59  MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 95


>SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)
          Length = 401

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 171 STVKITPQSPPEGYNTPKPIPSNSASNESMGLLGEIVNEIQNRNFDS 311
           STV +  Q   E      P+P  S   E + L+GE+ + +++ +  S
Sbjct: 321 STVPVGSQQVSEAAQEEAPLPDPSTMQEILSLVGEVTSAVESGDSSS 367


>SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
          Length = 447

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 45  MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 81


>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1273

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 580 MDGIPMRLMVDPEAKPVAHHTPIPVPLHWQEEVKAGL 616


>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
          Length = 1502

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 560 MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 596


>SB_11094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 277 MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 313


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 171 STVKITPQSPPEGYNTPKPIPSNSASNESMGLLGEIVNEIQNRNFDS 311
           STV +  Q   E      P+P  S   E + L+GE+ + +++ +  S
Sbjct: 564 STVPVGSQQVSEAAQEEAPLPDPSTMQEILSLVGEVTSAVESGDSSS 610


>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
          Length = 842

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 156 LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           + G+P  + + P++ P  ++TP P+P +       GL
Sbjct: 782 MDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGL 818


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,304,107
Number of Sequences: 59808
Number of extensions: 495278
Number of successful extensions: 1319
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)