Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20193
(817 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 27 0.69
AY341187-1|AAR13751.1| 189|Anopheles gambiae GNBP A1 protein. 25 2.1
AY341186-1|AAR13750.1| 189|Anopheles gambiae GNBP A1 protein. 25 2.1
AY341185-1|AAR13749.1| 189|Anopheles gambiae GNBP A1 protein. 25 2.1
AY341183-1|AAR13747.1| 189|Anopheles gambiae GNBP A1 protein. 25 2.1
AJ302661-1|CAC35526.1| 128|Anopheles gambiae gSG8 protein protein. 25 2.8
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 25 2.8
AY341191-1|AAR13755.1| 191|Anopheles gambiae GNBP B1 protein. 24 6.4
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 23 8.5
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T... 23 8.5
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T... 23 8.5
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 27.1 bits (57), Expect = 0.69
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 777 PQYRLSASVMILIPYLIGERNRFKLLNVLSFLAD 676
P++RL ++ + PYL +RN F+ L+ +F+ D
Sbjct: 108 PKFRLYVGIVYVPPYLSSDRNYFESLS--AFIXD 139
>AY341187-1|AAR13751.1| 189|Anopheles gambiae GNBP A1 protein.
Length = 189
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 300 RTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAP 422
RT AT+ +TT + + + T+ PP P T + G P
Sbjct: 116 RTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTFNGGQP 156
>AY341186-1|AAR13750.1| 189|Anopheles gambiae GNBP A1 protein.
Length = 189
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 300 RTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAP 422
RT AT+ +TT + + + T+ PP P T + G P
Sbjct: 116 RTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTFNGGQP 156
>AY341185-1|AAR13749.1| 189|Anopheles gambiae GNBP A1 protein.
Length = 189
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 300 RTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAP 422
RT AT+ +TT + + + T+ PP P T + G P
Sbjct: 116 RTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTFNGGQP 156
>AY341183-1|AAR13747.1| 189|Anopheles gambiae GNBP A1 protein.
Length = 189
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 300 RTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAP 422
RT AT+ +TT + + + T+ PP P T + G P
Sbjct: 116 RTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTFNGGQP 156
>AJ302661-1|CAC35526.1| 128|Anopheles gambiae gSG8 protein protein.
Length = 128
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 266 KGDSYIILRTTSDSRNNLSWDI 331
+GD ++ LRT++ +R L W I
Sbjct: 23 RGDPFVALRTSTTNRTLLCWAI 44
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 161 PSGF--CQCRQNSRCANMENTELRTNTRCSEGHRKFYKG 271
PSG QC Q +C +N E R RC E ++G
Sbjct: 991 PSGSKGSQCNQYGQCPCNDNVEGRRCDRCKENKYDRHQG 1029
>AY341191-1|AAR13755.1| 191|Anopheles gambiae GNBP B1 protein.
Length = 191
Score = 23.8 bits (49), Expect = 6.4
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 439 DHGSRKCFVPIIFPDTLDLFGGRDPSGFNHVVTNAGAQKRMFQ 567
D G C +IF DT D F D + H T AG FQ
Sbjct: 34 DRGRTFCSGELIFEDTFDFF---DFEKWEHENTLAGGGNWEFQ 73
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 266 KGDSYIILRTTSDSRNN 316
+G+ ++ILRTT+D N
Sbjct: 1049 QGNGHLILRTTNDQEGN 1065
>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
phosphatase protein.
Length = 1977
Score = 23.4 bits (48), Expect = 8.5
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = +2
Query: 188 NSRCANMENTELRTNTRCSEGHRKFYKGDSYIILRTTSDSRNNLSWDIHYWIGREST--Q 361
N + A+ T+ +CSE HR+ + + ++ H W T Q
Sbjct: 96 NCKDASTVRCSFATSEQCSEWHRRI-----TLSIGVPETLEALFAFPFHAWASESPTLNQ 150
Query: 362 DESGAAAILTVG-LDDKF 412
D A + VG DD+F
Sbjct: 151 DNEWAGRLQRVGSFDDEF 168
>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
phosphatase protein.
Length = 1978
Score = 23.4 bits (48), Expect = 8.5
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = +2
Query: 188 NSRCANMENTELRTNTRCSEGHRKFYKGDSYIILRTTSDSRNNLSWDIHYWIGREST--Q 361
N + A+ T+ +CSE HR+ + + ++ H W T Q
Sbjct: 96 NCKDASTVRCSFATSEQCSEWHRRI-----TLSIGVPETLEALFAFPFHAWASESPTLNQ 150
Query: 362 DESGAAAILTVG-LDDKF 412
D A + VG DD+F
Sbjct: 151 DNEWAGRLQRVGSFDDEF 168
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,158
Number of Sequences: 2352
Number of extensions: 19491
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -