Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20123
         (581 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    144   2e-36
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    26   0.77 
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    26   1.0  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.1  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.5  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   9.5  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  144 bits (349), Expect = 2e-36
 Identities = 71/75 (94%), Positives = 72/75 (96%)
 Frame = +2

Query: 8   RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
           R R  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 72  RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131

Query: 188 LSDYNIQKESTLHLV 232
           LSDYNIQKESTLHLV
Sbjct: 132 LSDYNIQKESTLHLV 146



 Score =  144 bits (349), Expect = 2e-36
 Identities = 71/75 (94%), Positives = 72/75 (96%)
 Frame = +2

Query: 8   RRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 187
           R R  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207

Query: 188 LSDYNIQKESTLHLV 232
           LSDYNIQKESTLHLV
Sbjct: 208 LSDYNIQKESTLHLV 222



 Score =  143 bits (346), Expect = 4e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +2

Query: 23  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 202
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 203 IQKESTLHLV 232
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 576 LSSDTVSRFYLKSIIHSSRERSFRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 418
           L S TV    +  +I  + E +  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 LVSQTVFSLLVGHVITKTSE-AVPLLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 13  ESEDANFRKDPHGQDHH 63
           ESE  N RK PH QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 504 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 418
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 477 VFEDHRAVTLPAVVTVLHHRHE 412
           +F DHR    PA V  L   HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 187 PLGLQYPEGIHPPPGV 234
           P G+  P G H PPG+
Sbjct: 5   PPGVNRPPGSHRPPGL 20


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,078
Number of Sequences: 2352
Number of extensions: 12630
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)