Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00040
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    25   2.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.5  
AY390608-1|AAR27305.1|  242|Anopheles gambiae SP22D protein.           23   7.3  
AY390607-1|AAR27304.1|  242|Anopheles gambiae SP22D protein.           23   7.3  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.7  

>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 463 VVGPSRRRHQQDLCFGI*THANTCRPSP 380
           ++  + + H+ D CFGI TH  TC+  P
Sbjct: 338 ILSLNEQGHKID-CFGIGTHLVTCQRQP 364


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 400 NTCRPSPKTLVVIYPYRIRLL 338
           N CRP  +T+  +Y  R+ L+
Sbjct: 842 NECRPDAETVAYLYHIRMELI 862


>AY390608-1|AAR27305.1|  242|Anopheles gambiae SP22D protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 496 FRLYSPARHNP-VVGPSRRRHQQ 431
           ++   P R +P +VGP +++HQQ
Sbjct: 5   YQYAQPQRQHPSLVGPQQQQHQQ 27


>AY390607-1|AAR27304.1|  242|Anopheles gambiae SP22D protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 496 FRLYSPARHNP-VVGPSRRRHQQ 431
           ++   P R +P +VGP +++HQQ
Sbjct: 5   YQYAQPQRQHPSLVGPQQQQHQQ 27


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 392 ACICVRSDAETEVLLVTSSRRPDNW 466
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 392 ACICVRSDAETEVLLVTSSRRPDNW 466
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,549
Number of Sequences: 2352
Number of extensions: 14489
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)