Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30206.Seq
         (533 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   1.2  
AF043439-1|AAC05664.1|  239|Anopheles gambiae putative pupal-spe...    23   4.9  
AF043433-2|AAC05657.1|  239|Anopheles gambiae putative pupal-spe...    23   4.9  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    23   6.4  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 340  QINTITQRQQNRCRSRAAVSARDDGGHVLDRFDRN 444
            QI +  QR  N  R+R AVS+     H +   DRN
Sbjct: 1026 QITSALQRDWNEERARLAVSSTLSPSHPVGPSDRN 1060


>AF043439-1|AAC05664.1|  239|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 239

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 416 ATSSTGSIETFHHYNSSKTKETTLIFRKPTKERIPSVH 529
           A +S G +   HH + + +  T      PT + + SVH
Sbjct: 13  AAASAGLLPVAHHGSIATSHSTIQHHAAPTIQHVGSVH 50


>AF043433-2|AAC05657.1|  239|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 239

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 416 ATSSTGSIETFHHYNSSKTKETTLIFRKPTKERIPSVH 529
           A +S G +   HH + + +  T      PT + + SVH
Sbjct: 13  AAASAGLLPVAHHGSIATSHSTIQHHAAPTIQHVGSVH 50


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 371  TGAGREPRCPRGMTAATSSTGSIETFHHYNSSKT 472
            T  G   RC  G  ++TSS+ S  + H  +SS +
Sbjct: 1077 TLVGALNRCSNGSCSSTSSSHSNHSSHSSSSSNS 1110


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,566
Number of Sequences: 2352
Number of extensions: 9239
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)