Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30202.Seq
         (801 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          27   0.51 
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          27   0.51 
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          27   0.51 
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           27   0.67 
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    26   1.6  
AF317817-1|AAL18436.1|  137|Anopheles gambiae glucose-6-phosphat...    23   8.3  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 387 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSRRKY 563
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 564 PSYIKKIGYNPAA 602
           P  + +   NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 387 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSRRKY 563
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 564 PSYIKKIGYNPAA 602
           P  + +   NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 387 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSRRKY 563
           V  G G+ ++ +    Q++   +L     ++  ++   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGQKDSYVGDEAQSKR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 564 PSYIKKIGYNPAA 602
           P  + +   NP A
Sbjct: 103 PVLLTEAPLNPKA 115


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 387 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-LIVGVNKMDPLNHHTVSPDLRKSRRKY 563
           V  G G  +A +    Q++   +L     ++  +I   + M+ + HHT   +LR +  ++
Sbjct: 44  VMVGMGNKDAYVGDEAQSKR-GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEH 102

Query: 564 PSYIKKIGYNP 596
           P  + +   NP
Sbjct: 103 PVLLTEAPLNP 113


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 ARFHPRCQTAHRRSKQNGSTEPPYS 529
           ARF P   T+HR S  N S+  P S
Sbjct: 344 ARFDPSALTSHRSSSANCSSAAPKS 368


>AF317817-1|AAL18436.1|  137|Anopheles gambiae glucose-6-phosphate
           dehydrogenase protein.
          Length = 137

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 753 GWHRELPMRPFSRSALPS--LTLHL 685
           GW+R +  +PF R A  S  L++HL
Sbjct: 106 GWNRIIVEKPFGRDAQSSNVLSVHL 130


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,820
Number of Sequences: 2352
Number of extensions: 18260
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84408009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)