SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30148.Seq
         (812 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    36   0.002
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.8  

>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
 Frame = +3

Query: 279 DPEQIKEINNYYDIETTVTVEFDTGQAYRDFVAGPYFRNRIEDQITESYRPTRSPA---- 446
           DP++ ++ N+    +TT+ +E  TGQ  R F+    F N I++++ ESY PT   A    
Sbjct: 241 DPKEAEDTNDKTSKKTTL-MEV-TGQYERTFIT---FENDIDNKLFESYFPTPDAARKHR 295

Query: 447 -----TTVPSAYDDPDPQLYFR 497
                T +P+ Y DP  QL +R
Sbjct: 296 QICAVTRLPARYYDPITQLPYR 317


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 342  FDTGQAYRDFVAGPYFRNRIEDQ 410
            FD G+ +RD V  P++RNR + Q
Sbjct: 1018 FDVGK-FRDAVVMPWYRNRDQPQ 1039


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,229
Number of Sequences: 2352
Number of extensions: 14541
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86071221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -