Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0093.Seq
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein...    77   4e-16
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    26   0.89 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.6  

>AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein 70
           protein.
          Length = 78

 Score = 77.4 bits (182), Expect = 4e-16
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE 639
           FNDSQRQATKDAG I+GLNV+RIINEPTAAA+AYGLDK   GE
Sbjct: 10  FNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLDKNLKGE 52


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 264 IVLWGSSPPGSWRHLR*DARCL*TQHK-TEWSCC 166
           IV+WG  PPG   + R D R   ++ K ++ +CC
Sbjct: 329 IVVWGKRPPGEAENSR-DQRMAKSKRKFSQQNCC 361


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 65   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 166
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,276
Number of Sequences: 2352
Number of extensions: 17236
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)