Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c22
         (757 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    29   0.20 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   0.62 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.4  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   4.4  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.8  
AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450 CY...    24   5.8  

>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 425 GPSRGRLRRHSQHLSQLSVHEARYR-----RTKKEIFNETLHGI 541
           GP+R +   H+ +    S+H  RY      R KK+ F+E L  I
Sbjct: 56  GPARRKSNLHNDNFDTSSIHSDRYNGEAGGRAKKQSFSEALEKI 99


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +3

Query: 399 LVVEELSRVDPAVAAYVDIHNTLVNSL--FMKL-----GTEEQKKKYLTKLCTE 539
           LV EE+ + D  V+A     +TL NSL  F K+      T E++KK L ++  E
Sbjct: 356 LVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERRKKTLEQIAAE 409


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 342 PSTHYQTTSVGYHH 301
           PSTH+Q  +V  HH
Sbjct: 862 PSTHHQAAAVAAHH 875


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 18  ASAEAARFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVGA 146
           A AE  R HS     +    LR+    + +E+W++   A   A
Sbjct: 857 AVAEDTRVHSRRGTGVSSSELRKEERQRTIEEWQTTWDADAAA 899


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 331 LSNNICRIPSSMRCSSSIFFTSGL 260
           LSN  CR+ +    S   F TSG+
Sbjct: 649 LSNRSCRVKTGSYLSEEFFCTSGV 672


>AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450
           CYP12F4 protein.
          Length = 521

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 405 PPTSLSGNCSRNRCILPEFRCP 340
           PPTS +G C+    +L  +R P
Sbjct: 387 PPTSGNGRCTGKDLVLQGYRVP 408


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,619
Number of Sequences: 2352
Number of extensions: 16227
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)