Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0196
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    26   1.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   3.1  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   4.1  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   9.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   9.5  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 146  YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN 310
            YNH  E ++  V+ + IGRN  +   +N+ +A      P+  +       +KRAN
Sbjct: 1710 YNHVAESILHAVHDEPIGRNYGNG--LNIGNAGHTGEIPLRPLVLDDSSILKRAN 1762


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 653 EYVNLLMSPQGQVLSAHVAG 712
           EY+N+++ P G   SA VAG
Sbjct: 30  EYLNIILGPNGTGKSAIVAG 49


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -1

Query: 334 LCDCCQPNICTLDM--EERCAC 275
           LC CC+ + C  +M     CAC
Sbjct: 779 LCHCCEFDACDCEMTCPNNCAC 800


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 80  ITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAF-RVNVIHA 241
           ITL+  +  C  S  ++       H   +L+S +YR   + G  AVD+  RV V+ A
Sbjct: 3   ITLQINISNCSTSQNLMLQAAKEQHADVILVSELYRHPPNNGNWAVDSSGRVAVVAA 59


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  LKECEASPTMIGGLFVYNHKGEV-LISRVYRDDIGRN 205
           L  CE    M+G L +   KG+V ++S  YR   G N
Sbjct: 8   LNHCEEVQDMLGQLLI-EEKGDVAMLSEPYRCPSGVN 43


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,934
Number of Sequences: 2352
Number of extensions: 16454
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)