Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021109
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    31   0.057
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    26   1.6  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   6.6  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 41  KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK- 217
           + E+ A+ +D+   +R  +   EH+IRN E   +K  S  D  +A  E    + VA+ + 
Sbjct: 324 QEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEA 383

Query: 218 YDEVAQTLE 244
           Y  V +TL+
Sbjct: 384 YGTVRRTLQ 392


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 457  TEDDLKILDDLYPEVT 504
            T+ +LKILDD+ PE+T
Sbjct: 1029 TKRELKILDDIMPEMT 1044


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +2

Query: 155 YRDLQKAGKELNSDQKVAVA------KYDEVAQTLE 244
           +  L  AG+EL+S  KVA+        YD +  TLE
Sbjct: 125 FSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLE 160


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,911
Number of Sequences: 2352
Number of extensions: 12427
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)