Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021049
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    34   0.005
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.45 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.0  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   1.8  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   4.2  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   7.3  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 33.9 bits (74), Expect = 0.005
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 526 EVENTLSELLAERANLEEQIAEINGKAQAFEEELITVSR----DRDNFQLKYVSAETTLK 693
           E  N L E   +   + E +  I  + +  EEE   +S     D+    L+YV  ET LK
Sbjct: 174 ESMNLLRESEGKLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDKARRTLEYVIYETELK 233

Query: 694 ESEKQVKEIE 723
           E+ KQ++E++
Sbjct: 234 ETRKQLEELD 243


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 329 ELSTTKTKLAGIEDN-SFGMDDMVQSLKEEINEMKAQNDRLRHSLD 463
           EL+T ++++ G+E+   + M+D+ ++ K+ INE   Q +     LD
Sbjct: 710 ELTTVESQIRGLENRLKYSMNDL-ETSKKNINEYDRQLEDFTRELD 754


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 23/115 (20%), Positives = 51/115 (44%)
 Frame = +2

Query: 269  INSLQRDLLFTTKECEILKEELSTTKTKLAGIEDNSFGMDDMVQSLKEEINEMKAQNDRL 448
            I + +R++  +  +   +++E+   ++ +    D    +++    L+EE+ EMK   ++ 
Sbjct: 923  IKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKA 982

Query: 449  RHSLDDNEKLLRVSENTAEEFRTLSAKWRILSVSFWLKELT*RSKLQKSMEKLKH 613
                   +K     E  A + R    K + L     L+  T  +KLQ++ + L H
Sbjct: 983  HEGSSSIKK-----EIVALQKREAEGKMKRLEFEQILQ--TIETKLQETKDTLPH 1030


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 502 RGVQNTLSEVENTLSELLAERANLEEQIAEINGKAQAFEEEL----ITVSRDRDNFQLKY 669
           + ++ T  + E+   +L   R  +EE++ E    AQ  EEE          D +  +++ 
Sbjct: 43  QNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRREEEARRREEAAKADNEKLRVEQ 102

Query: 670 VSAETTLKESEKQVKEIEQ 726
               TTL     Q+++++Q
Sbjct: 103 QETHTTLIAISAQLRDLQQ 121


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 18/77 (23%), Positives = 37/77 (48%)
 Frame = +2

Query: 323 KEELSTTKTKLAGIEDNSFGMDDMVQSLKEEINEMKAQNDRLRHSLDDNEKLLRVSENTA 502
           K+EL T+K K   I   S           +EIN ++ + +RL  ++   ++ L  +   A
Sbjct: 275 KKELETSKAKQVAIGQRS----------TDEINSLEEKTERLEDTISKQKRELMDALAKA 324

Query: 503 EEFRTLSAKWRILSVSF 553
           +E +T   + +++  +F
Sbjct: 325 DERKTELDEAKVMLAAF 341


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 311 CEILKEELSTTKTKLAGIEDNSFGMDDMVQSLKEEINEMKAQNDRLRHSLDDNEKLLRVS 490
           C +  E+L  ++     +    FGM   ++ LK   NE+    D+    L++ + +L +S
Sbjct: 243 CALDLEDLDVSRNHFVLLPAAGFGMLKRLKMLKIHDNEISMVGDKALSGLNELQ-ILDLS 301

Query: 491 EN 496
            N
Sbjct: 302 SN 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,629
Number of Sequences: 2352
Number of extensions: 11722
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)