Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B21
         (865 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    46   1e-06
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   3.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   3.9  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   9.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.1  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   9.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
 Frame = +2

Query: 176 CSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAASK 355
           C +C A F     LK H  +H   +    +   C  C        +   H+++ H A   
Sbjct: 270 CDVCFARFTQSNSLKAHKMIHQVGNKPVFQ---CKLCPTTCGRKTDLRIHVQNLHTADKP 326

Query: 356 F-CQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERH 499
             C+ C   F D   YK H + H   K  Y  C  C    I+   LE H
Sbjct: 327 IKCKRCDSTFPDRYSYKMHAKTHEGEKC-YR-CEYCPYASISMRHLESH 373



 Score = 46.0 bits (104), Expect = 1e-06
 Identities = 35/156 (22%), Positives = 60/156 (38%)
 Frame = +2

Query: 173 ICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAAS 352
           +C+ CN        L +HLK HS      +R   C  CE  +  +     H+        
Sbjct: 128 MCNYCNYTSNKLFLLSRHLKTHSE-----DRPHKCVVCERGFKTLASLQNHVNTHTGTKP 182

Query: 353 KFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHVDEG 532
             C+ C   F    +  +H R  +T +  +  C++C    +   +L+RH +  H      
Sbjct: 183 HRCKHCDNCFTTSGELIRHIRYRHTHERPHK-CTECDYASVELSKLKRH-IRTHTGEKPF 240

Query: 533 VFLHNLYPFLSSVLNMKMSTFTKVKADDSDYSCTVC 640
              H  Y   +S    K++   ++   +  YSC VC
Sbjct: 241 QCPHCTY---ASPDKFKLTRHMRIHTGEKPYSCDVC 273



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
 Frame = +2

Query: 86  LCTTMGGDANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTER 265
           LC T  G    +T L I     + A+  + C  C++ F D    K H K H     + E+
Sbjct: 302 LCPTTCGR---KTDLRIHVQNLHTADKPIKCKRCDSTFPDRYSYKMHAKTH-----EGEK 353

Query: 266 RKTCDFCECKYADVEEYAYHIRDSHLAASKF-CQLCSRVFIDFNKYKQHTRKHY------ 424
              C++C      +     H+   H     + C  C++ F      K+H   ++      
Sbjct: 354 CYRCEYCPYASISMRHLESHLL-LHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVA 412

Query: 425 -TAKSEYNACSQCSALYINEMELERH 499
            T K++ + C  C   + ++  L RH
Sbjct: 413 PTPKAKTHICPTCKRPFRHKGNLIRH 438



 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 617 SDYSCTVCDYKTNDLDLYIQHLQ 685
           S Y C  C+Y +N L L  +HL+
Sbjct: 125 STYMCNYCNYTSNKLFLLSRHLK 147


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 161 EVDVICSICNAEFLDPGDLKQHL 229
           +V ++  +C AE+ + GD++ HL
Sbjct: 96  KVSLLKKLCKAEYDESGDMEAHL 118


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 212 LRDRETPRCILNILHRLQ 159
           L D ET +CI  +L+RLQ
Sbjct: 354 LHDDETGQCIRKVLYRLQ 371


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 287 ECKYADVEEYAYHIRDSHLAASKF 358
           E K  DV EYAYH++   +  + +
Sbjct: 102 ELKPLDVCEYAYHLKKDEVCINPY 125


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 570  TDDRNGYRLCRNTPSSTCLWFSTSCRSNSISLMYSAE 460
            TD+  G    R   S + L + + C SNS +  YS++
Sbjct: 1299 TDNDMGEEGRRGASSPSFLRYDSDCSSNSSANFYSSD 1335


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 669 TYNIYKRKTVGSLACDSCGNVYKL 740
           T  +++R   G   C++CG  +KL
Sbjct: 184 TTTLWRRNNDGEPVCNACGLYFKL 207


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,619
Number of Sequences: 2352
Number of extensions: 19386
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92199573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)