Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D03
         (849 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    26   1.3  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   5.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   8.9  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   8.9  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 168  YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN 332
            YNH  E ++  V+ + IGRN  +   +N+ +A      P+  +       +KRAN
Sbjct: 1710 YNHVAESILHAVHDEPIGRNYGNG--LNIGNAGHTGEIPLRPLVLDDSSILKRAN 1762


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -2

Query: 356 LCDCCQPNICTLDM--EERCAC 297
           LC CC+ + C  +M     CAC
Sbjct: 779 LCHCCEFDACDCEMTCPNNCAC 800


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 678 YVNLLMSPQGQVLSAHVAGKVV 743
           Y+N+++ P G   SA VAG V+
Sbjct: 31  YLNIILGPNGTGKSAIVAGIVL 52


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +3

Query: 531 LKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLD---VLXYVNLLMSP 701
           L + +T+    + +  +Q Q  + V G   WR    KY R  + L       Y +++ +P
Sbjct: 227 LGSMMTENKASTFNMNKQQQRLTGVHGGCPWRPPNFKYGRGIIGLHQEIEQFYAHMIATP 286

Query: 702 QGQVLSAHVAGKV 740
               L   V  ++
Sbjct: 287 TEHALRVMVVSRI 299


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 871,978
Number of Sequences: 2352
Number of extensions: 18898
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)