Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30153.Seq
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109372-1|AAI09373.1| 323|Homo sapiens mitochondrial ribosomal... 116 1e-25
BC063515-1|AAH63515.1| 321|Homo sapiens MRPS35 protein protein. 116 1e-25
BC028346-1|AAH28346.2| 319|Homo sapiens MRPS35 protein protein. 116 1e-25
BC015862-1|AAH15862.2| 323|Homo sapiens mitochondrial ribosomal... 116 1e-25
AK075515-1|BAC11664.1| 323|Homo sapiens protein ( Homo sapiens ... 116 1e-25
AK075378-1|BAC11579.1| 194|Homo sapiens protein ( Homo sapiens ... 116 1e-25
AF182422-1|AAG14958.1| 227|Homo sapiens MDS023 protein. 81 4e-15
Z85987-1|CAI42222.1| 961|Homo sapiens FYVE, RhoGEF and PH domai... 36 0.25
U11690-1|AAA57004.1| 961|Homo sapiens FGD1 protein. 36 0.25
BC034530-1|AAH34530.1| 961|Homo sapiens FYVE, RhoGEF and PH dom... 36 0.25
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 33 1.0
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein. 33 1.0
AF068296-1|AAF65185.1| 144|Homo sapiens HDCMD11P protein. 33 1.3
>BC109372-1|AAI09373.1| 323|Homo sapiens mitochondrial ribosomal
protein S35 protein.
Length = 323
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 63 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 122
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 123 CEALKDFCTEWPAALDSDEKCEKHFP 148
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 142 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 201
Query: 673 TDLVTI 690
TD++TI
Sbjct: 202 TDVLTI 207
>BC063515-1|AAH63515.1| 321|Homo sapiens MRPS35 protein protein.
Length = 321
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 61 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 120
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 121 CEALKDFCTEWPAALDSDEKCEKHFP 146
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 140 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 199
Query: 673 TDLVTI 690
TD++TI
Sbjct: 200 TDVLTI 205
>BC028346-1|AAH28346.2| 319|Homo sapiens MRPS35 protein protein.
Length = 319
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 59 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 118
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 119 CEALKDFCTEWPAALDSDEKCEKHFP 144
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 138 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 197
Query: 673 TDLVTI 690
TD++TI
Sbjct: 198 TDVLTI 203
>BC015862-1|AAH15862.2| 323|Homo sapiens mitochondrial ribosomal
protein S35 protein.
Length = 323
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 63 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 122
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 123 CEALKDFCTEWPAALDSDEKCEKHFP 148
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 142 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 201
Query: 673 TDLVTI 690
TD++TI
Sbjct: 202 TDVLTI 207
>AK075515-1|BAC11664.1| 323|Homo sapiens protein ( Homo sapiens
cDNA PSEC0213 fis, clone HEMBA1004078, highly similar to
Mitochondrial ribosomal protein S35. ).
Length = 323
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 63 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 122
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 123 CEALKDFCTEWPAALDSDEKCEKHFP 148
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 142 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 201
Query: 673 TDLVTI 690
TD++TI
Sbjct: 202 TDVLTI 207
>AK075378-1|BAC11579.1| 194|Homo sapiens protein ( Homo sapiens
cDNA PSEC0068 fis, clone NT2RP2001270. ).
Length = 194
Score = 116 bits (278), Expect = 1e-25
Identities = 50/86 (58%), Positives = 60/86 (69%)
Frame = +2
Query: 257 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 436
+Q+W +V+P F PS+VPLP+R GY K P K+ N EL+KIPNFLHLTP IK
Sbjct: 63 DQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKH 122
Query: 437 CEALKQFCTEWPNLLNSEESIEKHIP 514
CEALK FCTEWP L+S+E EKH P
Sbjct: 123 CEALKDFCTEWPAALDSDEKCEKHFP 148
Score = 46.0 bits (104), Expect = 2e-04
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKL 615
K + +P+EI S+DY + PS+RNP ARVV+LRV + +L
Sbjct: 142 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVPFKEAEL 182
>AF182422-1|AAG14958.1| 227|Homo sapiens MDS023 protein.
Length = 227
Score = 81.4 bits (192), Expect = 4e-15
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = +2
Query: 365 KKANAELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHIP 514
K+ N EL+KIPNFLHLTP IK CEALK FCTEWP L+S+E EKH P
Sbjct: 3 KEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFP 52
Score = 75.8 bits (178), Expect = 2e-13
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +1
Query: 493 KYREAYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPK 672
K + +P+EI S+DY + PS+RNP ARVV+LRV+L+ L LD HA K +LVG+RY
Sbjct: 46 KCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKT 105
Query: 673 TDLVTI 690
TD++TI
Sbjct: 106 TDVLTI 111
>Z85987-1|CAI42222.1| 961|Homo sapiens FYVE, RhoGEF and PH domain
containing 1 (faciogenital dysplasia) protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.25
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 281 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 421
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>U11690-1|AAA57004.1| 961|Homo sapiens FGD1 protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.25
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 281 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 421
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>BC034530-1|AAH34530.1| 961|Homo sapiens FYVE, RhoGEF and PH domain
containing 1 (faciogenital dysplasia) protein.
Length = 961
Score = 35.5 bits (78), Expect = 0.25
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 281 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 421
PGP T PS P P+++ PK Q PP K + ++ ++P L PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 33.5 bits (73), Expect = 1.0
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 254 PNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKS 433
PN + +P P F P P+P P APPG+ +M P+ H PP +
Sbjct: 103 PNHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMP 161
Query: 434 Q 436
Q
Sbjct: 162 Q 162
>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
Length = 1374
Score = 33.5 bits (73), Expect = 1.0
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 254 PNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKS 433
PN + +P P F P P+P P APPG+ +M P+ H PP +
Sbjct: 103 PNHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMP 161
Query: 434 Q 436
Q
Sbjct: 162 Q 162
>AF068296-1|AAF65185.1| 144|Homo sapiens HDCMD11P protein.
Length = 144
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 607 LKLDKHATDKFKRLVGDRYDPKTDLVTI 690
L LD HA K +LVG+RY TD++TI
Sbjct: 1 LNLDDHAKKKLIKLVGERYCKTTDVLTI 28
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,525,427
Number of Sequences: 237096
Number of extensions: 2823597
Number of successful extensions: 6161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6156
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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