Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30055
         (565 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002331-1|AAH02331.1|  166|Homo sapiens chromosome 11 open read...   128   1e-29
AK000494-1|BAA91204.1|  166|Homo sapiens protein ( Homo sapiens ...   128   1e-29
BC117445-1|AAI17446.1|  546|Homo sapiens LOC129881 protein protein.    33   0.69 
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated...    32   1.6  
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ...    32   1.6  

>BC002331-1|AAH02331.1|  166|Homo sapiens chromosome 11 open reading
           frame 79 protein.
          Length = 166

 Score =  128 bits (309), Expect = 1e-29
 Identities = 58/111 (52%), Positives = 77/111 (69%)
 Frame = +2

Query: 191 SDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFN 370
           S T +  D   + +P +     + +E ++ARL Y+SRKRGMLEN +LLS FAK++L    
Sbjct: 39  SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98

Query: 371 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDK 523
           EKQ  +YDRLIN PSNDWDI+YW  E KP PE F+NE+M LL+  AKN++K
Sbjct: 99  EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNK 149


>AK000494-1|BAA91204.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20487 fis, clone KAT08245. ).
          Length = 166

 Score =  128 bits (309), Expect = 1e-29
 Identities = 58/111 (52%), Positives = 77/111 (69%)
 Frame = +2

Query: 191 SDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFN 370
           S T +  D   + +P +     + +E ++ARL Y+SRKRGMLEN +LLS FAK++L    
Sbjct: 39  SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98

Query: 371 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDK 523
           EKQ  +YDRLIN PSNDWDI+YW  E KP PE F+NE+M LL+  AKN++K
Sbjct: 99  EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNK 149


>BC117445-1|AAI17446.1|  546|Homo sapiens LOC129881 protein protein.
          Length = 546

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
 Frame = +2

Query: 236 LYDVEKQQPLEKRKARLHYQSRKRGM--LENDLLLSTFAKKYLNGFNEKQTMMY---DRL 400
           LY++E ++ LEK++  +H +SR+R +  +++  ++    ++     +EK         RL
Sbjct: 243 LYEIEMRKKLEKKREEMH-ESRRRFLEHMQDKHIIKAVEQQQQEEEDEKMRKFIKAKKRL 301

Query: 401 INSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDKIALR 535
           I          + ++EK+   E   N + +LLK+   NED I  R
Sbjct: 302 IQMGKEKEAETHRLMEKR--RERIHNFLSELLKEKLDNEDMIIAR 344


>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
           protein protein.
          Length = 5005

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 305 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNE 481
           +G LEN  ++   + +Y+   N E   +M +  +   SND DI+Y++ E    PEE +  
Sbjct: 251 KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 310

Query: 482 I 484
           I
Sbjct: 311 I 311


>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42912 fis, clone BRHIP3024533. ).
          Length = 1168

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 305 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNE 481
           +G LEN  ++   + +Y+   N E   +M +  +   SND DI+Y++ E    PEE +  
Sbjct: 5   KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 64

Query: 482 I 484
           I
Sbjct: 65  I 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,278,351
Number of Sequences: 237096
Number of extensions: 1529652
Number of successful extensions: 10684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10683
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)