Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20094
         (527 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro...    32   1.4  
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot...    30   5.8  
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot...    30   5.8  
CR533459-1|CAG38490.1|  148|Homo sapiens DKFZP564J157 protein.         30   5.8  

>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
           protein.
          Length = 1798

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 419 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 330
           +C  V  G+F P  DH +   EN RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAENTRGQVLD 580


>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
           protein.
          Length = 1798

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 419 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 330
           +C  V  G+F P  DH +   E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580


>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
           protein.
          Length = 1798

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 419 KCHLVPKGHFTPLTDHGVESTENKRGTVTD 330
           +C  V  G+F P  DH +   E+ RG V D
Sbjct: 551 RCEQVQPGYFRPFLDHLIWEAEDTRGQVLD 580


>CR533459-1|CAG38490.1|  148|Homo sapiens DKFZP564J157 protein.
          Length = 148

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 182 APHGFPPGLGGGISHPRLLSLDNPSLGQEGQVPGRYPGCIDDIPPAYKISP 334
           APHG P    GG  HP +     P     G  P  YP     IPP   ++P
Sbjct: 47  APHGNPAFPSGGPPHP-VPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAP 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,644,075
Number of Sequences: 237096
Number of extensions: 1892208
Number of successful extensions: 8654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8644
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)