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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d03
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                 259   6e-69
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...   259   6e-69
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...   259   6e-69
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...   259   6e-69
BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.       136   4e-32
AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens ...   110   3e-24
BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal...    54   3e-07
BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.        54   3e-07
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late...    31   2.9  
BC146798-1|AAI46799.1|  792|Homo sapiens Unknown (protein for IM...    31   2.9  
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr...    31   2.9  
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr...    31   2.9  
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ...    31   2.9  
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ...    31   2.9  
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.        31   2.9  
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr...    31   2.9  
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr...    31   2.9  
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p...    31   2.9  
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr...    31   2.9  
AL080226-1|CAB45780.1|  520|Homo sapiens hypothetical protein pr...    31   2.9  
AL122010-1|CAI23556.1|  979|Homo sapiens discs, large (Drosophil...    31   3.8  
BC054882-1|AAH54882.1|  204|Homo sapiens Unknown (protein for IM...    30   6.7  
AL391827-3|CAI16232.1|  689|Homo sapiens novel protein protein.        30   6.7  
AL391827-2|CAI16231.1|  198|Homo sapiens novel protein protein.        30   6.7  
Y08201-1|CAA69383.1|  331|Homo sapiens rab geranylgeranyl transf...    29   8.8  
X98001-1|CAA66638.1|  331|Homo sapiens geranylgeranyl transferas...    29   8.8  
U49245-1|AAA91473.1|  331|Homo sapiens geranylgeranyl transferas...    29   8.8  
CR456941-1|CAG33222.1|  331|Homo sapiens RABGGTB protein.              29   8.8  
BC020790-1|AAH20790.1|  331|Homo sapiens Rab geranylgeranyltrans...    29   8.8  
AL357314-5|CAI22393.1|  331|Homo sapiens Rab geranylgeranyltrans...    29   8.8  
AK126054-1|BAC86416.1|  926|Homo sapiens protein ( Homo sapiens ...    29   8.8  
AB209023-1|BAD92260.1|  320|Homo sapiens Rab geranylgeranyltrans...    29   8.8  

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score =  259 bits (634), Expect = 6e-69
 Identities = 117/141 (82%), Positives = 136/141 (96%)
 Frame = +1

Query: 46  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 225
           P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 226 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 405
           VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66  VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125

Query: 406 RCEPKKFGGPGARARYQKSYR 468
           RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  259 bits (634), Expect = 6e-69
 Identities = 117/141 (82%), Positives = 136/141 (96%)
 Frame = +1

Query: 46  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 225
           P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 226 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 405
           VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66  VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125

Query: 406 RCEPKKFGGPGARARYQKSYR 468
           RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  259 bits (634), Expect = 6e-69
 Identities = 117/141 (82%), Positives = 136/141 (96%)
 Frame = +1

Query: 46  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 225
           P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 226 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 405
           VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66  VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125

Query: 406 RCEPKKFGGPGARARYQKSYR 468
           RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score =  259 bits (634), Expect = 6e-69
 Identities = 117/141 (82%), Positives = 136/141 (96%)
 Frame = +1

Query: 46  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 225
           P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 226 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 405
           VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66  VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125

Query: 406 RCEPKKFGGPGARARYQKSYR 468
           RCE KKFGGPGARARYQKSYR
Sbjct: 126 RCESKKFGGPGARARYQKSYR 146


>BC071674-1|AAH71674.1|  152|Homo sapiens RPS16 protein protein.
          Length = 152

 Score =  136 bits (330), Expect = 4e-32
 Identities = 60/83 (72%), Positives = 75/83 (90%)
 Frame = +1

Query: 46  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 225
           P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ 
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65

Query: 226 VDIRVTVKGGGHVAQVYAIRQAI 294
           VDIRV VKGGGHVAQ+Y   Q +
Sbjct: 66  VDIRVRVKGGGHVAQIYGESQEL 88



 Score = 30.7 bits (66), Expect = 3.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 PSTRNM*TKPQRRKSKTS*YNTIGVCW 391
           P TRNM  +  RR+SKTS  +  G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152


>AK097937-1|BAC85106.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40618 fis, clone THYMU2013089, moderately
           similar to 40S RIBOSOMAL PROTEIN S16. ).
          Length = 178

 Score =  110 bits (265), Expect = 3e-24
 Identities = 57/108 (52%), Positives = 75/108 (69%)
 Frame = +1

Query: 49  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 228
           +Q+VQ+F  K+ A AV  C+ G G +R+N  PL+++    LQYKL E  LLL KE+ + +
Sbjct: 18  LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77

Query: 229 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 372
           DI V VKG GHV Q+YA+ Q ISKAL+  Y KYVDEAS +EIKD L +
Sbjct: 78  DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124


>BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal
           protein S9 protein.
          Length = 396

 Score = 54.4 bits (125), Expect = 3e-07
 Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
 Frame = +1

Query: 70  GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 246
           G++KTA A A   K G G ++VNG    L  P + Q + Q        ++    D+  TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332

Query: 247 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 426
            GGG  AQ  AIR A++KAL +F  +  DE                LL  DPR  E KK 
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382

Query: 427 GGPGARARY 453
           G  GAR ++
Sbjct: 383 GQEGARRKF 391


>BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.
          Length = 302

 Score = 54.4 bits (125), Expect = 3e-07
 Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
 Frame = +1

Query: 70  GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 246
           G++KTA A A   K G G ++VNG    L  P + Q + Q        ++    D+  TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238

Query: 247 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 426
            GGG  AQ  AIR A++KAL +F  +  DE                LL  DPR  E KK 
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288

Query: 427 GGPGARARY 453
           G  GAR ++
Sbjct: 289 GQEGARRKF 297


>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
           element protein protein.
          Length = 1530

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>BC146798-1|AAI46799.1|  792|Homo sapiens Unknown (protein for
           IMAGE:8860302) protein.
          Length = 792

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381


>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1530

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1530

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
           1-like protein.
          Length = 1127

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 157 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 333
           +P  L  K  EP L    +KF  +D+R + +   H+  V+  +  I + L  +YQ +VD
Sbjct: 42  KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97


>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
           1-like protein.
          Length = 1127

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 157 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 333
           +P  L  K  EP L    +KF  +D+R + +   H+  V+  +  I + L  +YQ +VD
Sbjct: 42  KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97


>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
          Length = 1024

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1023

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1530

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1023

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
           protein 2 protein.
          Length = 1530

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382


>AL080226-1|CAB45780.1|  520|Homo sapiens hypothetical protein
           protein.
          Length = 520

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 399
           Q+Y+I    SK L+    K   + SK+E K++L+ +D SL + +
Sbjct: 61  QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104


>AL122010-1|CAI23556.1|  979|Homo sapiens discs, large (Drosophila)
           homolog-associated protein 3 protein.
          Length = 979

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 225 GRHQSDSQGWWSCSTSLRYPTSYFKG 302
           GRHQ+ S GWWS   +L   + +  G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276


>BC054882-1|AAH54882.1|  204|Homo sapiens Unknown (protein for
           IMAGE:6451327) protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 337 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 420
           ASKK +K+ +++ YD   +  DP +C P+
Sbjct: 16  ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44


>AL391827-3|CAI16232.1|  689|Homo sapiens novel protein protein.
          Length = 689

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 337 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 420
           ASKK +K+ +++ YD   +  DP +C P+
Sbjct: 16  ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44


>AL391827-2|CAI16231.1|  198|Homo sapiens novel protein protein.
          Length = 198

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 337 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 420
           ASKK +K+ +++ YD   +  DP +C P+
Sbjct: 16  ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44


>Y08201-1|CAA69383.1|  331|Homo sapiens rab geranylgeranyl
           transferase protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>X98001-1|CAA66638.1|  331|Homo sapiens geranylgeranyl transferase
           II protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>U49245-1|AAA91473.1|  331|Homo sapiens geranylgeranyl transferase
           type II beta-subunit protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>CR456941-1|CAG33222.1|  331|Homo sapiens RABGGTB protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>BC020790-1|AAH20790.1|  331|Homo sapiens Rab
           geranylgeranyltransferase, beta subunit protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>AL357314-5|CAI22393.1|  331|Homo sapiens Rab
           geranylgeranyltransferase, beta subunit protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


>AK126054-1|BAC86416.1|  926|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44066 fis, clone TESTI4036909, weakly  similar
           to Regulator of nonsense transcripts 1. ).
          Length = 926

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +1

Query: 124 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 303
           L     P  +   R+ + K   P       KF ++ +  T+K    + QV+ + +  + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444

Query: 304 LIAFYQKYVDEASKKEIKDI 363
           LI   Q      S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464


>AB209023-1|BAD92260.1|  320|Homo sapiens Rab
           geranylgeranyltransferase, beta subunit variant protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 SDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 329
           SD  GWW C   L  P+    G    LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,864,547
Number of Sequences: 237096
Number of extensions: 2141389
Number of successful extensions: 5235
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5231
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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